Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
IFT140Q96RY7 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
IFT140Q96RY7 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
IFT140Q96RY7 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC23.52■■□□□ 1.35
IFT140Q96RY7 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
IFT140Q96RY7 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
IFT140Q96RY7 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
IFT140Q96RY7 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 JPT2-203ENST00000382711 894 ntTSL 4 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 AC022447.5-201ENST00000504817 392 ntBASIC23.51■■□□□ 1.35
IFT140Q96RY7 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
IFT140Q96RY7 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC23.51■■□□□ 1.35
IFT140Q96RY7 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
IFT140Q96RY7 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC23.5■■□□□ 1.35
IFT140Q96RY7 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
IFT140Q96RY7 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 DPY19L2P4-201ENST00000479881 442 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 CLPP-205ENST00000596605 646 ntTSL 2 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 PRR20FP-201ENST00000603320 180 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 AC087072.1-201ENST00000603727 421 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 RNA5SP491-201ENST00000362936 118 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 RN7SKP212-201ENST00000410851 328 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 CCND3P1-201ENST00000438347 580 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 KRT19P4-201ENST00000443208 943 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 PSME2P2-201ENST00000453033 700 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 SLC25A15P1-201ENST00000456738 342 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 RN7SL672P-201ENST00000474091 317 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 ABCC6P1-203ENST00000565566 1170 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
IFT140Q96RY7 KF455155.1-201ENST00000604493 303 ntBASIC23.49■■□□□ 1.35
IFT140Q96RY7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC23.49■■□□□ 1.35
IFT140Q96RY7 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
IFT140Q96RY7 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
IFT140Q96RY7 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
IFT140Q96RY7 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC23.48■■□□□ 1.35
IFT140Q96RY7 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC23.48■■□□□ 1.35
IFT140Q96RY7 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
IFT140Q96RY7 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
IFT140Q96RY7 ACE3P-201ENST00000423435 1973 ntBASIC23.48■■□□□ 1.35
IFT140Q96RY7 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
IFT140Q96RY7 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
IFT140Q96RY7 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC23.48■■□□□ 1.35
IFT140Q96RY7 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
IFT140Q96RY7 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC23.48■■□□□ 1.35
IFT140Q96RY7 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms