Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 COX5BP1-201ENST00000507622 393 ntBASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 AC104989.1-201ENST00000519711 778 ntBASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 AC131206.1-201ENST00000538078 1211 ntBASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 INE2-201ENST00000630399 1874 ntBASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SYNE3Q6ZMZ3 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 AC023310.1-201ENST00000554836 735 ntBASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 UCKL1-AS1-201ENST00000623569 3602 ntBASIC17.44■□□□□ 0.38
SYNE3Q6ZMZ3 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 RN7SKP175-201ENST00000408472 289 ntBASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 ACA64.2-201ENST00000459014 129 ntBASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 GCOM2-201ENST00000509133 1104 ntBASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.43■□□□□ 0.38
SYNE3Q6ZMZ3 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms