Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PPT1-215ENST00000641471 2368 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 PRSS30P-206ENST00000641773 873 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 TBC1D3J-201ENST00000620719 1426 ntBASIC14.27□□□□□ -0.12
COL28A1Q2UY09 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
COL28A1Q2UY09 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 AL627231.1-201ENST00000394467 1125 ntBASIC14.27□□□□□ -0.13
COL28A1Q2UY09 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 ISCA2P1-201ENST00000425548 448 ntBASIC14.27□□□□□ -0.13
COL28A1Q2UY09 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 DNM1P51-201ENST00000558149 522 ntBASIC14.27□□□□□ -0.13
COL28A1Q2UY09 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 RN7SL596P-201ENST00000582123 288 ntBASIC14.27□□□□□ -0.13
COL28A1Q2UY09 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 OR10B1P-201ENST00000601666 907 ntBASIC14.27□□□□□ -0.13
COL28A1Q2UY09 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL28A1Q2UY09 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AC007787.1-201ENST00000588095 1583 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AL137784.3-201ENST00000623858 2288 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AL512430.1-201ENST00000392575 860 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AL133267.1-201ENST00000398220 340 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 MARK2P5-201ENST00000507649 634 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 DNM1P30-201ENST00000563586 452 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AC073413.1-201ENST00000603927 732 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AC051619.9-201ENST00000623237 597 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms