Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PKNOX1P55347 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PKNOX1P55347 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
PKNOX1P55347 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.58□□□□□ -0.07
PKNOX1P55347 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.58□□□□□ -0.07
PKNOX1P55347 KRT8P22-201ENST00000562317 1415 ntBASIC14.58□□□□□ -0.07
PKNOX1P55347 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
PKNOX1P55347 AC130686.1-201ENST00000622936 2466 ntBASIC14.58□□□□□ -0.07
PKNOX1P55347 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
PKNOX1P55347 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.58□□□□□ -0.07
PKNOX1P55347 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.58□□□□□ -0.07
PKNOX1P55347 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
PKNOX1P55347 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
PKNOX1P55347 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
PKNOX1P55347 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.58□□□□□ -0.08
PKNOX1P55347 C1QBPP1-201ENST00000400117 770 ntBASIC14.58□□□□□ -0.08
PKNOX1P55347 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.58□□□□□ -0.08
PKNOX1P55347 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.58□□□□□ -0.08
PKNOX1P55347 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.58□□□□□ -0.08
PKNOX1P55347 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.58□□□□□ -0.08
PKNOX1P55347 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.58□□□□□ -0.08
PKNOX1P55347 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.58□□□□□ -0.08
PKNOX1P55347 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
PKNOX1P55347 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
PKNOX1P55347 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
PKNOX1P55347 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC14.57□□□□□ -0.08
PKNOX1P55347 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.57□□□□□ -0.08
PKNOX1P55347 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
PKNOX1P55347 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 RNU1-114P-201ENST00000365297 166 ntBASIC14.57□□□□□ -0.08
PKNOX1P55347 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 TLE1P1-201ENST00000422965 589 ntBASIC14.57□□□□□ -0.08
PKNOX1P55347 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.57□□□□□ -0.08
PKNOX1P55347 AC093214.1-201ENST00000511688 1107 ntBASIC14.57□□□□□ -0.08
PKNOX1P55347 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.57□□□□□ -0.08
PKNOX1P55347 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.57□□□□□ -0.08
PKNOX1P55347 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.57□□□□□ -0.08
PKNOX1P55347 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.57□□□□□ -0.08
PKNOX1P55347 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.57□□□□□ -0.08
PKNOX1P55347 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 AL359183.1-201ENST00000623796 2132 ntBASIC14.57□□□□□ -0.08
PKNOX1P55347 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 SLC7A15P-201ENST00000424028 1363 ntBASIC14.57□□□□□ -0.08
PKNOX1P55347 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.57□□□□□ -0.08
PKNOX1P55347 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.57□□□□□ -0.08
PKNOX1P55347 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
PKNOX1P55347 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
PKNOX1P55347 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
PKNOX1P55347 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms