Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC15.35■□□□□ 0.05
COL4A4P53420 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 NAA40-205ENST00000539656 577 ntTSL 4 BASIC15.35■□□□□ 0.05
COL4A4P53420 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC15.35■□□□□ 0.05
COL4A4P53420 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 MIR6746-201ENST00000620971 63 ntBASIC15.35■□□□□ 0.05
COL4A4P53420 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC15.35■□□□□ 0.05
COL4A4P53420 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.35■□□□□ 0.05
COL4A4P53420 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL4A4P53420 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
COL4A4P53420 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.35■□□□□ 0.05
COL4A4P53420 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 AGGF1P1-201ENST00000509500 2073 ntBASIC15.35■□□□□ 0.05
COL4A4P53420 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 LINC00552-201ENST00000625151 2579 ntBASIC15.35■□□□□ 0.05
COL4A4P53420 AL591122.2-201ENST00000624125 1853 ntBASIC15.35■□□□□ 0.05
COL4A4P53420 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC15.35■□□□□ 0.05
COL4A4P53420 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC15.35■□□□□ 0.05
COL4A4P53420 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 RN7SL530P-201ENST00000485097 298 ntBASIC15.35■□□□□ 0.05
COL4A4P53420 AC083801.1-201ENST00000491689 358 ntBASIC15.35■□□□□ 0.05
COL4A4P53420 AC093826.1-201ENST00000508655 993 ntBASIC15.35■□□□□ 0.05
COL4A4P53420 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC15.35■□□□□ 0.05
COL4A4P53420 KRT8P2-201ENST00000556193 944 ntBASIC15.35■□□□□ 0.05
COL4A4P53420 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC15.35■□□□□ 0.05
COL4A4P53420 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC15.35■□□□□ 0.05
COL4A4P53420 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL4A4P53420 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
COL4A4P53420 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.34■□□□□ 0.05
COL4A4P53420 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 AC140479.7-201ENST00000636301 2332 ntBASIC15.34■□□□□ 0.05
COL4A4P53420 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
COL4A4P53420 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC15.34■□□□□ 0.05
COL4A4P53420 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC15.34■□□□□ 0.05
COL4A4P53420 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 RNA5SP406-201ENST00000516106 112 ntBASIC15.34■□□□□ 0.05
COL4A4P53420 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC15.34■□□□□ 0.05
COL4A4P53420 AC226150.1-201ENST00000544259 466 ntBASIC15.34■□□□□ 0.05
COL4A4P53420 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC15.34■□□□□ 0.05
COL4A4P53420 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.34■□□□□ 0.05
COL4A4P53420 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
COL4A4P53420 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.34■□□□□ 0.05
COL4A4P53420 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL4A4P53420 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
COL4A4P53420 HTR7P1-202ENST00000624664 4411 ntBASIC15.33■□□□□ 0.05
COL4A4P53420 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL4A4P53420 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL4A4P53420 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
COL4A4P53420 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
COL4A4P53420 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC15.33■□□□□ 0.04
COL4A4P53420 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL4A4P53420 AC015802.1-201ENST00000588104 1449 ntBASIC15.33■□□□□ 0.04
COL4A4P53420 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC15.33■□□□□ 0.04
COL4A4P53420 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms