Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SOX3P41225 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14□□□□□ -0.17
SOX3P41225 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14□□□□□ -0.17
SOX3P41225 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 AC026954.1-201ENST00000429771 1293 ntBASIC14□□□□□ -0.17
SOX3P41225 CSF2RBP1-201ENST00000447905 391 ntBASIC14□□□□□ -0.17
SOX3P41225 FO681548.1-201ENST00000455617 1132 ntBASIC14□□□□□ -0.17
SOX3P41225 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 AC078819.1-201ENST00000547454 765 ntBASIC14□□□□□ -0.17
SOX3P41225 AC012085.1-201ENST00000548270 765 ntBASIC14□□□□□ -0.17
SOX3P41225 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14□□□□□ -0.17
SOX3P41225 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14□□□□□ -0.17
SOX3P41225 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14□□□□□ -0.17
SOX3P41225 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14□□□□□ -0.17
SOX3P41225 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SOX3P41225 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SOX3P41225 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14□□□□□ -0.17
SOX3P41225 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14□□□□□ -0.17
SOX3P41225 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14□□□□□ -0.17
SOX3P41225 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 PCDHGB8P-201ENST00000502926 1973 ntBASIC14□□□□□ -0.17
SOX3P41225 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14□□□□□ -0.17
SOX3P41225 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14□□□□□ -0.17
SOX3P41225 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.99□□□□□ -0.17
SOX3P41225 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.99□□□□□ -0.17
SOX3P41225 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SOX3P41225 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
SOX3P41225 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.99□□□□□ -0.17
SOX3P41225 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.99□□□□□ -0.17
SOX3P41225 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.99□□□□□ -0.17
SOX3P41225 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
SOX3P41225 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.99□□□□□ -0.17
SOX3P41225 RNA5SP486-201ENST00000515961 83 ntBASIC13.99□□□□□ -0.17
SOX3P41225 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.99□□□□□ -0.17
SOX3P41225 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
SOX3P41225 AC079316.1-201ENST00000548397 411 ntBASIC13.99□□□□□ -0.17
SOX3P41225 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.99□□□□□ -0.17
SOX3P41225 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
SOX3P41225 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.99□□□□□ -0.17
SOX3P41225 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.99□□□□□ -0.17
SOX3P41225 ECM1P1-201ENST00000604092 1279 ntBASIC13.99□□□□□ -0.17
SOX3P41225 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.99□□□□□ -0.17
SOX3P41225 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.99□□□□□ -0.17
SOX3P41225 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SOX3P41225 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.99□□□□□ -0.17
SOX3P41225 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
SOX3P41225 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
SOX3P41225 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SOX3P41225 AC055811.4-201ENST00000624039 1754 ntBASIC13.99□□□□□ -0.17
SOX3P41225 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
SOX3P41225 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SOX3P41225 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms