Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC14.81□□□□□ -0.04
SHOX2O60902 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
SHOX2O60902 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SHOX2O60902 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.81□□□□□ -0.04
SHOX2O60902 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC14.81□□□□□ -0.04
SHOX2O60902 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC14.81□□□□□ -0.04
SHOX2O60902 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 VRK3-209ENST00000594948 1847 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
SHOX2O60902 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
SHOX2O60902 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 AC004623.1-201ENST00000624592 2127 ntBASIC14.8□□□□□ -0.04
SHOX2O60902 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SHOX2O60902 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 AC003958.1-201ENST00000435883 421 ntBASIC14.8□□□□□ -0.04
SHOX2O60902 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.8□□□□□ -0.04
SHOX2O60902 KRT18P43-201ENST00000469825 1281 ntBASIC14.8□□□□□ -0.04
SHOX2O60902 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC14.8□□□□□ -0.04
SHOX2O60902 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.8□□□□□ -0.04
SHOX2O60902 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SHOX2O60902 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 AL121723.1-201ENST00000445194 1519 ntBASIC14.8□□□□□ -0.04
SHOX2O60902 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.8□□□□□ -0.04
SHOX2O60902 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.8□□□□□ -0.04
SHOX2O60902 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SHOX2O60902 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SHOX2O60902 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.8□□□□□ -0.04
SHOX2O60902 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SHOX2O60902 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SHOX2O60902 MIR346-201ENST00000362234 95 ntBASIC14.79□□□□□ -0.04
SHOX2O60902 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 INPP5J-208ENST00000412277 3512 ntTSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 ABCD1P2-201ENST00000429313 1601 ntBASIC14.79□□□□□ -0.04
SHOX2O60902 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SHOX2O60902 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 AC004066.1-201ENST00000502488 802 ntBASIC14.79□□□□□ -0.04
SHOX2O60902 AC008620.2-201ENST00000510294 1569 ntBASIC14.79□□□□□ -0.04
SHOX2O60902 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.79□□□□□ -0.04
SHOX2O60902 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
SHOX2O60902 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 AC068137.2-201ENST00000605408 478 ntBASIC14.79□□□□□ -0.04
SHOX2O60902 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.79□□□□□ -0.04
SHOX2O60902 BAP1-211ENST00000615113 489 ntBASIC14.79□□□□□ -0.04
SHOX2O60902 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC14.79□□□□□ -0.04
SHOX2O60902 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC14.79□□□□□ -0.04
SHOX2O60902 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SHOX2O60902 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SHOX2O60902 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
SHOX2O60902 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SHOX2O60902 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 299.4 ms