Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
COL6A5A8TX70 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC11.18□□□□□ -0.62
COL6A5A8TX70 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 API5-203ENST00000455725 2257 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AC011270.2-201ENST00000624293 2550 ntBASIC11.17□□□□□ -0.62
COL6A5A8TX70 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AC004910.1-201ENST00000433493 787 ntBASIC11.17□□□□□ -0.62
COL6A5A8TX70 KRT18P62-201ENST00000446618 1287 ntBASIC11.17□□□□□ -0.62
COL6A5A8TX70 AC009517.1-201ENST00000454750 570 ntBASIC11.17□□□□□ -0.62
COL6A5A8TX70 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 NAA40-205ENST00000539656 577 ntTSL 4 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 BX322562.1-201ENST00000617004 561 ntBASIC11.17□□□□□ -0.62
COL6A5A8TX70 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
COL6A5A8TX70 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.17□□□□□ -0.62
COL6A5A8TX70 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 POP5-201ENST00000341039 913 ntTSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 WDR54-202ENST00000409791 854 ntTSL 3 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 UGT1A12P-201ENST00000447084 853 ntBASIC11.16□□□□□ -0.62
COL6A5A8TX70 AC095040.1-201ENST00000513286 675 ntBASIC11.16□□□□□ -0.62
COL6A5A8TX70 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AC139100.2-201ENST00000616901 662 ntBASIC11.16□□□□□ -0.62
COL6A5A8TX70 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC11.16□□□□□ -0.62
COL6A5A8TX70 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AL365181.1-201ENST00000564032 1828 ntBASIC11.16□□□□□ -0.62
COL6A5A8TX70 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC11.16□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms