Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VTA1Q9NP79 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC16.41■□□□□ 0.22
VTA1Q9NP79 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC16.41■□□□□ 0.22
VTA1Q9NP79 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.41■□□□□ 0.22
VTA1Q9NP79 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VTA1Q9NP79 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTA1Q9NP79 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTA1Q9NP79 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 AC027237.1-201ENST00000560942 655 ntBASIC16.4■□□□□ 0.22
VTA1Q9NP79 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 AC007881.3-201ENST00000608897 607 ntBASIC16.4■□□□□ 0.22
VTA1Q9NP79 MIR6842-201ENST00000612539 65 ntBASIC16.4■□□□□ 0.22
VTA1Q9NP79 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 AC006504.5-208ENST00000588784 2401 ntBASIC16.4■□□□□ 0.22
VTA1Q9NP79 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 PAUPAR-201ENST00000630360 2965 ntBASIC16.4■□□□□ 0.22
VTA1Q9NP79 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.4■□□□□ 0.22
VTA1Q9NP79 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTA1Q9NP79 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
VTA1Q9NP79 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
VTA1Q9NP79 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
VTA1Q9NP79 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
VTA1Q9NP79 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.39■□□□□ 0.22
VTA1Q9NP79 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
VTA1Q9NP79 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.22
VTA1Q9NP79 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 HYMAI-201ENST00000635591 3347 ntBASIC16.39■□□□□ 0.21
VTA1Q9NP79 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.39■□□□□ 0.21
VTA1Q9NP79 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 SOD2-202ENST00000367054 815 ntTSL 2 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 AL627422.1-201ENST00000434104 580 ntBASIC16.39■□□□□ 0.21
VTA1Q9NP79 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 FTH1P22-201ENST00000456305 520 ntBASIC16.39■□□□□ 0.21
VTA1Q9NP79 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 AC135983.4-201ENST00000564116 1262 ntBASIC16.39■□□□□ 0.21
VTA1Q9NP79 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 MIR4522-201ENST00000584932 87 ntBASIC16.39■□□□□ 0.21
VTA1Q9NP79 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.39■□□□□ 0.21
VTA1Q9NP79 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTA1Q9NP79 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
VTA1Q9NP79 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
VTA1Q9NP79 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
VTA1Q9NP79 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VTA1Q9NP79 AC015688.4-201ENST00000580780 1647 ntBASIC16.38■□□□□ 0.21
VTA1Q9NP79 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VTA1Q9NP79 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC16.38■□□□□ 0.21
VTA1Q9NP79 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VTA1Q9NP79 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.38■□□□□ 0.21
VTA1Q9NP79 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VTA1Q9NP79 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VTA1Q9NP79 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
VTA1Q9NP79 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms