Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 RHOQP1-201ENST00000555758 579 ntBASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AC013355.1-201ENST00000562625 723 ntBASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 AC068587.8-201ENST00000641239 219 ntBASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAIPQ9BWF2 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC004899.1-201ENST00000424687 1714 ntBASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC232323.1-201ENST00000540724 2099 ntBASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC106794.1-201ENST00000506935 792 ntBASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 MARK2P5-201ENST00000507649 634 ntBASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC100827.2-201ENST00000563214 1194 ntBASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC132192.2-201ENST00000596206 1147 ntBASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 AC023090.2-201ENST00000625182 2110 ntBASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
TRAIPQ9BWF2 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAIPQ9BWF2 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms