Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 RPL4P6-201ENST00000438116 1304 ntBASIC12.58□□□□□ -0.4
COL12A1Q99715 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
COL12A1Q99715 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
COL12A1Q99715 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 SEPHS2P1-201ENST00000511618 1162 ntBASIC12.58□□□□□ -0.4
COL12A1Q99715 TPST2P1-201ENST00000564073 1102 ntBASIC12.58□□□□□ -0.4
COL12A1Q99715 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC12.58□□□□□ -0.4
COL12A1Q99715 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC12.58□□□□□ -0.4
COL12A1Q99715 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC12.58□□□□□ -0.4
COL12A1Q99715 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC12.58□□□□□ -0.4
COL12A1Q99715 Z82244.2-201ENST00000632196 448 ntBASIC12.58□□□□□ -0.4
COL12A1Q99715 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL12A1Q99715 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.57□□□□□ -0.4
COL12A1Q99715 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC12.57□□□□□ -0.4
COL12A1Q99715 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
COL12A1Q99715 AC007881.1-201ENST00000437460 187 ntBASIC12.57□□□□□ -0.4
COL12A1Q99715 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC12.57□□□□□ -0.4
COL12A1Q99715 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC12.57□□□□□ -0.4
COL12A1Q99715 RN7SL128P-201ENST00000467883 305 ntBASIC12.57□□□□□ -0.4
COL12A1Q99715 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 HINT1-205ENST00000508488 703 ntTSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC12.57□□□□□ -0.4
COL12A1Q99715 AC079414.2-201ENST00000567157 1104 ntBASIC12.57□□□□□ -0.4
COL12A1Q99715 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC12.57□□□□□ -0.4
COL12A1Q99715 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC12.57□□□□□ -0.4
COL12A1Q99715 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC12.57□□□□□ -0.4
COL12A1Q99715 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
COL12A1Q99715 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 MYL6-215ENST00000549566 685 ntTSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC12.57□□□□□ -0.4
COL12A1Q99715 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC12.57□□□□□ -0.4
COL12A1Q99715 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC12.57□□□□□ -0.4
COL12A1Q99715 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL12A1Q99715 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 AL008638.4-201ENST00000624792 1315 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 AC091951.1-201ENST00000512854 2465 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 AL590440.2-201ENST00000641973 1595 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC12.56□□□□□ -0.4
COL12A1Q99715 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC12.56□□□□□ -0.4
COL12A1Q99715 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC12.56□□□□□ -0.4
COL12A1Q99715 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 KRT8P2-201ENST00000556193 944 ntBASIC12.56□□□□□ -0.4
COL12A1Q99715 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC12.56□□□□□ -0.4
COL12A1Q99715 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.56□□□□□ -0.4
COL12A1Q99715 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL12A1Q99715 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
COL12A1Q99715 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms