Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.98□□□□□ -0.01
CHFRQ96EP1 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CHFRQ96EP1 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHFRQ96EP1 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CHFRQ96EP1 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHFRQ96EP1 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.98□□□□□ -0.01
CHFRQ96EP1 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHFRQ96EP1 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHFRQ96EP1 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHFRQ96EP1 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
CHFRQ96EP1 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.98□□□□□ -0.01
CHFRQ96EP1 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
CHFRQ96EP1 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CHFRQ96EP1 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 ACE3P-201ENST00000423435 1973 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 MIR557-201ENST00000385239 98 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 AC135983.4-201ENST00000564116 1262 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 LINC01783-202ENST00000614408 828 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 BX284668.2-205ENST00000619677 828 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 AC022532.1-201ENST00000624563 1728 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 AC023824.1-201ENST00000562945 2975 ntBASIC14.97□□□□□ -0.01
CHFRQ96EP1 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHFRQ96EP1 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.97□□□□□ -0.01
CHFRQ96EP1 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHFRQ96EP1 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 AC074138.1-201ENST00000611182 1303 ntBASIC14.96□□□□□ -0.01
CHFRQ96EP1 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHFRQ96EP1 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHFRQ96EP1 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHFRQ96EP1 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHFRQ96EP1 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHFRQ96EP1 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHFRQ96EP1 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHFRQ96EP1 AP000356.3-201ENST00000382243 753 ntBASIC14.96□□□□□ -0.01
CHFRQ96EP1 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
CHFRQ96EP1 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms