Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 LINC00552-201ENST00000625151 2579 ntBASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 AHCYP2-201ENST00000430630 1300 ntBASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 AC140479.7-201ENST00000636301 2332 ntBASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 AC006001.1-201ENST00000325130 474 ntBASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 AC108725.1-201ENST00000495472 409 ntBASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 RN7SL560P-201ENST00000577943 264 ntBASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 INE2-201ENST00000630399 1874 ntBASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.71■□□□□ 0.43
CHMP4CQ96CF2 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
CHMP4CQ96CF2 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 TLE1P1-201ENST00000422965 589 ntBASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 AC132938.4-201ENST00000623835 848 ntBASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CHMP4CQ96CF2 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 AC018529.2-202ENST00000611482 3087 ntBASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC17.69■□□□□ 0.42
CHMP4CQ96CF2 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms