Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 TPM3P8-201ENST00000330554 643 ntBASIC13.17□□□□□ -0.3
SKA3Q8IX90 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 POM121L8P-201ENST00000417732 1281 ntBASIC13.17□□□□□ -0.3
SKA3Q8IX90 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 KRT43P-201ENST00000434019 910 ntBASIC13.17□□□□□ -0.3
SKA3Q8IX90 POM121L9P-203ENST00000441984 1285 ntBASIC13.17□□□□□ -0.3
SKA3Q8IX90 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 MTHFR-210ENST00000641407 2387 ntBASIC13.17□□□□□ -0.3
SKA3Q8IX90 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.17□□□□□ -0.3
SKA3Q8IX90 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SKA3Q8IX90 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AC006504.5-208ENST00000588784 2401 ntBASIC13.16□□□□□ -0.3
SKA3Q8IX90 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SKA3Q8IX90 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
SKA3Q8IX90 CROCCP4-201ENST00000457096 498 ntBASIC13.16□□□□□ -0.3
SKA3Q8IX90 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms