Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
RNF4P78317 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
RNF4P78317 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.72□□□□□ -0.21
RNF4P78317 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
RNF4P78317 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
RNF4P78317 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.72□□□□□ -0.21
RNF4P78317 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
RNF4P78317 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
RNF4P78317 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.72□□□□□ -0.21
RNF4P78317 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.72□□□□□ -0.21
RNF4P78317 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.72□□□□□ -0.21
RNF4P78317 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 DUX4L46-201ENST00000566845 751 ntBASIC13.72□□□□□ -0.21
RNF4P78317 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.72□□□□□ -0.21
RNF4P78317 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.72□□□□□ -0.21
RNF4P78317 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.72□□□□□ -0.21
RNF4P78317 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.72□□□□□ -0.21
RNF4P78317 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC13.72□□□□□ -0.21
RNF4P78317 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
RNF4P78317 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
RNF4P78317 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
RNF4P78317 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
RNF4P78317 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RNF4P78317 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
RNF4P78317 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
RNF4P78317 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.71□□□□□ -0.21
RNF4P78317 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.71□□□□□ -0.21
RNF4P78317 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.71□□□□□ -0.21
RNF4P78317 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.71□□□□□ -0.21
RNF4P78317 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.71□□□□□ -0.21
RNF4P78317 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.71□□□□□ -0.21
RNF4P78317 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.71□□□□□ -0.21
RNF4P78317 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.71□□□□□ -0.21
RNF4P78317 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.71□□□□□ -0.21
RNF4P78317 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.71□□□□□ -0.21
RNF4P78317 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.71□□□□□ -0.21
RNF4P78317 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC13.71□□□□□ -0.21
RNF4P78317 MIR6869-201ENST00000619434 62 ntBASIC13.71□□□□□ -0.21
RNF4P78317 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.71□□□□□ -0.21
RNF4P78317 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RNF4P78317 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.71□□□□□ -0.21
RNF4P78317 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 E2F3P2-201ENST00000447755 1422 ntBASIC13.71□□□□□ -0.22
RNF4P78317 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.71□□□□□ -0.22
RNF4P78317 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.22
RNF4P78317 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.71□□□□□ -0.22
RNF4P78317 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RNF4P78317 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
RNF4P78317 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.7□□□□□ -0.22
RNF4P78317 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
RNF4P78317 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms