Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.91■□□□□ 0.14
VCPP55072 AL138709.1-201ENST00000614840 1693 ntBASIC15.91■□□□□ 0.14
VCPP55072 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
VCPP55072 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
VCPP55072 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.91■□□□□ 0.14
VCPP55072 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.91■□□□□ 0.14
VCPP55072 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
VCPP55072 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.9■□□□□ 0.14
VCPP55072 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 RPL13AP19-201ENST00000434320 584 ntBASIC15.9■□□□□ 0.14
VCPP55072 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.9■□□□□ 0.14
VCPP55072 KRT18P66-201ENST00000452970 1269 ntBASIC15.9■□□□□ 0.14
VCPP55072 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.9■□□□□ 0.14
VCPP55072 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.9■□□□□ 0.14
VCPP55072 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC15.9■□□□□ 0.14
VCPP55072 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.9■□□□□ 0.14
VCPP55072 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 BX539320.1-201ENST00000623759 877 ntBASIC15.9■□□□□ 0.14
VCPP55072 AC006453.4-201ENST00000636949 1252 ntBASIC15.9■□□□□ 0.14
VCPP55072 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
VCPP55072 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC15.9■□□□□ 0.14
VCPP55072 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC15.9■□□□□ 0.14
VCPP55072 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCPP55072 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.9■□□□□ 0.14
VCPP55072 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
VCPP55072 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VCPP55072 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 AL359258.3-201ENST00000622910 2331 ntBASIC15.89■□□□□ 0.13
VCPP55072 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VCPP55072 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VCPP55072 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 Z97180.1-201ENST00000445173 988 ntBASIC15.89■□□□□ 0.13
VCPP55072 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.89■□□□□ 0.13
VCPP55072 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.89■□□□□ 0.13
VCPP55072 RNA5SP486-201ENST00000515961 83 ntBASIC15.89■□□□□ 0.13
VCPP55072 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.89■□□□□ 0.13
VCPP55072 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.89■□□□□ 0.13
VCPP55072 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC15.89■□□□□ 0.13
VCPP55072 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.89■□□□□ 0.13
VCPP55072 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
VCPP55072 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.89■□□□□ 0.13
VCPP55072 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCPP55072 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms