Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 AC112492.5-201ENST00000421897 457 ntBASIC17.38■□□□□ 0.37
MRE11P49959 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.38■□□□□ 0.37
MRE11P49959 EEF1DP4-201ENST00000446006 880 ntBASIC17.38■□□□□ 0.37
MRE11P49959 PRYP6-201ENST00000514804 343 ntBASIC17.38■□□□□ 0.37
MRE11P49959 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.38■□□□□ 0.37
MRE11P49959 RAB43P1-201ENST00000561790 589 ntBASIC17.38■□□□□ 0.37
MRE11P49959 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.38■□□□□ 0.37
MRE11P49959 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.38■□□□□ 0.37
MRE11P49959 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 MIR6727-201ENST00000620702 65 ntBASIC17.38■□□□□ 0.37
MRE11P49959 IGHV3-72-202ENST00000621503 303 ntBASIC17.38■□□□□ 0.37
MRE11P49959 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.38■□□□□ 0.37
MRE11P49959 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC17.38■□□□□ 0.37
MRE11P49959 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
MRE11P49959 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 AL136982.4-201ENST00000437689 1740 ntBASIC17.38■□□□□ 0.37
MRE11P49959 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.38■□□□□ 0.37
MRE11P49959 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
MRE11P49959 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC17.37■□□□□ 0.37
MRE11P49959 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 ADK-205ENST00000539909 1866 ntTSL 2 BASIC17.37■□□□□ 0.37
MRE11P49959 OS9-206ENST00000435406 2346 ntTSL 2 BASIC17.37■□□□□ 0.37
MRE11P49959 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MRE11P49959 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.37■□□□□ 0.37
MRE11P49959 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MRE11P49959 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC17.37■□□□□ 0.37
MRE11P49959 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 MRPS18AP1-201ENST00000414458 589 ntBASIC17.37■□□□□ 0.37
MRE11P49959 RBPMS2P1-201ENST00000437762 623 ntBASIC17.37■□□□□ 0.37
MRE11P49959 AC022210.1-201ENST00000449856 793 ntBASIC17.37■□□□□ 0.37
MRE11P49959 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.37■□□□□ 0.37
MRE11P49959 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.37■□□□□ 0.37
MRE11P49959 AC004890.2-204ENST00000481968 304 ntBASIC17.37■□□□□ 0.37
MRE11P49959 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
MRE11P49959 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.37■□□□□ 0.37
MRE11P49959 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.37■□□□□ 0.37
MRE11P49959 OR7E47P-204ENST00000575924 449 ntBASIC17.37■□□□□ 0.37
MRE11P49959 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.37■□□□□ 0.37
MRE11P49959 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.37■□□□□ 0.37
MRE11P49959 AC024267.1-201ENST00000582320 895 ntBASIC17.37■□□□□ 0.37
MRE11P49959 RN7SL190P-201ENST00000582519 257 ntBASIC17.37■□□□□ 0.37
MRE11P49959 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.37■□□□□ 0.37
MRE11P49959 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.37■□□□□ 0.37
MRE11P49959 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.37■□□□□ 0.37
MRE11P49959 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
MRE11P49959 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC17.37■□□□□ 0.37
MRE11P49959 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
MRE11P49959 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MRE11P49959 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
MRE11P49959 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.36■□□□□ 0.37
MRE11P49959 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 AGGF1P1-201ENST00000509500 2073 ntBASIC17.36■□□□□ 0.37
MRE11P49959 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
MRE11P49959 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
MRE11P49959 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
MRE11P49959 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
MRE11P49959 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC17.36■□□□□ 0.37
MRE11P49959 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MRE11P49959 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms