Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX2P35548 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 AL158070.2-201ENST00000623713 1621 ntBASIC14.19□□□□□ -0.14
MSX2P35548 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX2P35548 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 AL591122.2-201ENST00000624125 1853 ntBASIC14.18□□□□□ -0.14
MSX2P35548 MYADML-201ENST00000474610 2147 ntBASIC14.18□□□□□ -0.14
MSX2P35548 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX2P35548 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX2P35548 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
MSX2P35548 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX2P35548 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
MSX2P35548 AL627223.1-201ENST00000416693 442 ntBASIC14.18□□□□□ -0.14
MSX2P35548 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX2P35548 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.18□□□□□ -0.14
MSX2P35548 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX2P35548 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
MSX2P35548 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.18□□□□□ -0.14
MSX2P35548 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.18□□□□□ -0.14
MSX2P35548 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.18□□□□□ -0.14
MSX2P35548 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.18□□□□□ -0.14
MSX2P35548 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.18□□□□□ -0.14
MSX2P35548 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 AC090643.2-201ENST00000623442 2029 ntBASIC14.18□□□□□ -0.14
MSX2P35548 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
MSX2P35548 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX2P35548 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 AC118758.2-201ENST00000614242 2813 ntBASIC14.18□□□□□ -0.14
MSX2P35548 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX2P35548 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX2P35548 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.17□□□□□ -0.14
MSX2P35548 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX2P35548 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
MSX2P35548 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
MSX2P35548 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms