Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR5001-201ENST00000580185 100 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A3P25940 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A3P25940 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 SHMT1P1-201ENST00000419974 1312 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
COL5A3P25940 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A3P25940 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
COL5A3P25940 AC103592.1-201ENST00000394513 664 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
COL5A3P25940 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC17.98■□□□□ 0.47
COL5A3P25940 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.98■□□□□ 0.47
COL5A3P25940 AC092896.1-201ENST00000465850 380 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC17.98■□□□□ 0.47
COL5A3P25940 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC17.98■□□□□ 0.47
COL5A3P25940 AC090136.2-201ENST00000517809 420 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC17.98■□□□□ 0.47
COL5A3P25940 CES1P2-201ENST00000566467 1242 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 TYMSP2-201ENST00000589501 424 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC17.98■□□□□ 0.47
COL5A3P25940 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.98■□□□□ 0.47
COL5A3P25940 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL5A3P25940 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A3P25940 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
COL5A3P25940 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL5A3P25940 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.97■□□□□ 0.47
COL5A3P25940 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
COL5A3P25940 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A3P25940 AC015909.5-201ENST00000624336 2266 ntBASIC17.97■□□□□ 0.47
COL5A3P25940 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL5A3P25940 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A3P25940 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC17.97■□□□□ 0.47
COL5A3P25940 GOLGA6L16P-201ENST00000441780 1299 ntBASIC17.97■□□□□ 0.47
COL5A3P25940 RPS18P9-201ENST00000482817 460 ntBASIC17.97■□□□□ 0.47
COL5A3P25940 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
COL5A3P25940 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC17.97■□□□□ 0.47
COL5A3P25940 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC17.97■□□□□ 0.47
COL5A3P25940 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC17.97■□□□□ 0.47
COL5A3P25940 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
COL5A3P25940 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.96■□□□□ 0.47
COL5A3P25940 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.96■□□□□ 0.47
COL5A3P25940 AC022532.1-201ENST00000624563 1728 ntBASIC17.96■□□□□ 0.47
COL5A3P25940 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
COL5A3P25940 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 AC018529.2-202ENST00000611482 3087 ntBASIC17.96■□□□□ 0.47
COL5A3P25940 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
COL5A3P25940 AF274858.1-201ENST00000406288 372 ntBASIC17.96■□□□□ 0.47
COL5A3P25940 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
COL5A3P25940 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC17.96■□□□□ 0.47
COL5A3P25940 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC17.96■□□□□ 0.47
COL5A3P25940 RN7SL288P-201ENST00000490496 291 ntBASIC17.96■□□□□ 0.47
COL5A3P25940 KNOP1P1-201ENST00000542108 989 ntBASIC17.96■□□□□ 0.47
COL5A3P25940 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 AC005274.1-201ENST00000623460 802 ntBASIC17.96■□□□□ 0.47
COL5A3P25940 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL5A3P25940 ENPP7P8-202ENST00000527856 1345 ntBASIC17.96■□□□□ 0.47
COL5A3P25940 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.96■□□□□ 0.47
COL5A3P25940 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL5A3P25940 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.96■□□□□ 0.47
COL5A3P25940 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.96■□□□□ 0.46
COL5A3P25940 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL5A3P25940 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL5A3P25940 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms