Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HLA-DOAP06340 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 FRMPD2B-201ENST00000431305 1347 ntBASIC17.33■□□□□ 0.36
HLA-DOAP06340 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 KRT18P36-201ENST00000411618 1276 ntBASIC17.33■□□□□ 0.36
HLA-DOAP06340 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 AC006453.1-201ENST00000636037 1257 ntBASIC17.33■□□□□ 0.36
HLA-DOAP06340 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.33■□□□□ 0.36
HLA-DOAP06340 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DOAP06340 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 AC018442.1-201ENST00000421439 2061 ntBASIC17.32■□□□□ 0.36
HLA-DOAP06340 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 FTLP1-201ENST00000449155 526 ntBASIC17.32■□□□□ 0.36
HLA-DOAP06340 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
HLA-DOAP06340 LINC00528-201ENST00000600723 2160 ntBASIC17.32■□□□□ 0.36
HLA-DOAP06340 AC015688.4-201ENST00000580780 1647 ntBASIC17.32■□□□□ 0.36
HLA-DOAP06340 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DOAP06340 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HLA-DOAP06340 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DOAP06340 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC17.31■□□□□ 0.36
HLA-DOAP06340 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HLA-DOAP06340 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HLA-DOAP06340 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DOAP06340 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HLA-DOAP06340 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DOAP06340 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HLA-DOAP06340 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms