Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
SDCBPO00560 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC12.68□□□□□ -0.38
SDCBPO00560 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
SDCBPO00560 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
SDCBPO00560 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 PMS2P2-201ENST00000425039 1128 ntBASIC12.68□□□□□ -0.38
SDCBPO00560 HNRNPA1P40-201ENST00000426371 1278 ntBASIC12.68□□□□□ -0.38
SDCBPO00560 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC12.68□□□□□ -0.38
SDCBPO00560 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 AC092183.1-201ENST00000469884 875 ntBASIC12.68□□□□□ -0.38
SDCBPO00560 AC004066.1-201ENST00000502488 802 ntBASIC12.68□□□□□ -0.38
SDCBPO00560 RFPL4AP1-201ENST00000530883 850 ntBASIC12.68□□□□□ -0.38
SDCBPO00560 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.68□□□□□ -0.38
SDCBPO00560 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.68□□□□□ -0.38
SDCBPO00560 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC12.68□□□□□ -0.38
SDCBPO00560 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 INO80C-210ENST00000590757 595 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
SDCBPO00560 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 AC012617.1-204ENST00000586340 2305 ntBASIC12.68□□□□□ -0.38
SDCBPO00560 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.68□□□□□ -0.38
SDCBPO00560 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
SDCBPO00560 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SDCBPO00560 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC12.68□□□□□ -0.38
SDCBPO00560 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
SDCBPO00560 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 CICP20-201ENST00000443330 2801 ntBASIC12.67□□□□□ -0.38
SDCBPO00560 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.67□□□□□ -0.38
SDCBPO00560 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.67□□□□□ -0.38
SDCBPO00560 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.67□□□□□ -0.38
SDCBPO00560 DOC2GP-202ENST00000514950 1163 ntBASIC12.67□□□□□ -0.38
SDCBPO00560 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.67□□□□□ -0.38
SDCBPO00560 TPRX2P-201ENST00000535362 881 ntBASIC12.67□□□□□ -0.38
SDCBPO00560 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12.67□□□□□ -0.38
SDCBPO00560 AL390955.2-201ENST00000603032 514 ntBASIC12.67□□□□□ -0.38
SDCBPO00560 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.67□□□□□ -0.38
SDCBPO00560 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SDCBPO00560 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.67□□□□□ -0.38
SDCBPO00560 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms