Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
COL21A1Q96P44 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL21A1Q96P44 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL21A1Q96P44 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL21A1Q96P44 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL21A1Q96P44 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL21A1Q96P44 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL21A1Q96P44 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 AC093433.1-201ENST00000458048 571 ntBASIC14.08□□□□□ -0.16
COL21A1Q96P44 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 KRT18P25-201ENST00000508931 1278 ntBASIC14.08□□□□□ -0.16
COL21A1Q96P44 TDH-203ENST00000531764 1110 ntBASIC14.08□□□□□ -0.16
COL21A1Q96P44 PTP4A1P2-201ENST00000546033 454 ntBASIC14.08□□□□□ -0.16
COL21A1Q96P44 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.08□□□□□ -0.16
COL21A1Q96P44 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL21A1Q96P44 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 AL139094.1-201ENST00000405549 1188 ntBASIC14.07□□□□□ -0.16
COL21A1Q96P44 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 TTTY23B-201ENST00000442790 549 ntBASIC14.07□□□□□ -0.16
COL21A1Q96P44 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 MIR5189-201ENST00000577370 114 ntBASIC14.07□□□□□ -0.16
COL21A1Q96P44 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 AC132938.2-201ENST00000579188 680 ntBASIC14.07□□□□□ -0.16
COL21A1Q96P44 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 AC015936.2-201ENST00000593177 259 ntBASIC14.07□□□□□ -0.16
COL21A1Q96P44 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 AL591163.1-201ENST00000641757 987 ntBASIC14.07□□□□□ -0.16
COL21A1Q96P44 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL21A1Q96P44 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.07□□□□□ -0.16
COL21A1Q96P44 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms