Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AL513477.1-201ENST00000602865 2407 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 BAIAP3-204ENST00000426824 3930 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC243562.2-201ENST00000561247 970 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC016629.1-201ENST00000596579 586 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AHCYP2-201ENST00000430630 1300 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AL157414.3-201ENST00000624276 1954 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 POLL-217ENST00000628479 1953 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 DNAJB8-202ENST00000469083 3365 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC104457.1-201ENST00000401024 814 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC022137.2-201ENST00000503482 481 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC009486.1-201ENST00000569860 813 ntBASIC4.64□□□□□ -1.67
SYNE1Q8NF91 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC4.64□□□□□ -1.67
SYNE1Q8NF91 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 AC073347.1-201ENST00000421633 2643 ntBASIC4.63□□□□□ -1.67
SYNE1Q8NF91 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 NUS1P3-201ENST00000423502 862 ntBASIC4.63□□□□□ -1.67
SYNE1Q8NF91 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 AF254983.2-201ENST00000612331 135 ntBASIC4.63□□□□□ -1.67
SYNE1Q8NF91 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 LINC02486-201ENST00000604157 3000 ntBASIC4.63□□□□□ -1.67
SYNE1Q8NF91 AC136621.1-201ENST00000624017 2304 ntBASIC4.63□□□□□ -1.67
SYNE1Q8NF91 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 S1PR3-201ENST00000358157 4206 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 RN7SL574P-201ENST00000581512 297 ntBASIC4.63□□□□□ -1.67
SYNE1Q8NF91 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC4.63□□□□□ -1.67
SYNE1Q8NF91 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms