Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
RNF4P78317 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 AC010141.1-201ENST00000411585 623 ntBASIC13.74□□□□□ -0.21
RNF4P78317 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 PUDPP3-201ENST00000445368 636 ntBASIC13.74□□□□□ -0.21
RNF4P78317 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 AL591846.1-201ENST00000451736 433 ntBASIC13.74□□□□□ -0.21
RNF4P78317 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 AC108725.1-201ENST00000495472 409 ntBASIC13.74□□□□□ -0.21
RNF4P78317 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.74□□□□□ -0.21
RNF4P78317 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.74□□□□□ -0.21
RNF4P78317 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.74□□□□□ -0.21
RNF4P78317 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 AL096828.3-201ENST00000615354 462 ntBASIC13.74□□□□□ -0.21
RNF4P78317 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.74□□□□□ -0.21
RNF4P78317 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RNF4P78317 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.74□□□□□ -0.21
RNF4P78317 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
RNF4P78317 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.73□□□□□ -0.21
RNF4P78317 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.73□□□□□ -0.21
RNF4P78317 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 MIR663B-201ENST00000408361 115 ntBASIC13.73□□□□□ -0.21
RNF4P78317 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.73□□□□□ -0.21
RNF4P78317 AL354877.1-201ENST00000424412 413 ntBASIC13.73□□□□□ -0.21
RNF4P78317 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.73□□□□□ -0.21
RNF4P78317 FAM8A2P-201ENST00000528813 1142 ntBASIC13.73□□□□□ -0.21
RNF4P78317 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.73□□□□□ -0.21
RNF4P78317 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.73□□□□□ -0.21
RNF4P78317 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 MIR4538-201ENST00000581377 78 ntBASIC13.73□□□□□ -0.21
RNF4P78317 AC104982.3-201ENST00000581995 514 ntBASIC13.73□□□□□ -0.21
RNF4P78317 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.73□□□□□ -0.21
RNF4P78317 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 AC005695.3-201ENST00000614522 232 ntBASIC13.73□□□□□ -0.21
RNF4P78317 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.73□□□□□ -0.21
RNF4P78317 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
RNF4P78317 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.73□□□□□ -0.21
RNF4P78317 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
RNF4P78317 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms