Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
LIG3P49916 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC15.72■□□□□ 0.11
LIG3P49916 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
LIG3P49916 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC15.72■□□□□ 0.11
LIG3P49916 CICP11-201ENST00000434745 2827 ntBASIC15.72■□□□□ 0.11
LIG3P49916 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.71■□□□□ 0.11
LIG3P49916 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 MTHFR-210ENST00000641407 2387 ntBASIC15.71■□□□□ 0.11
LIG3P49916 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 AC098614.1-201ENST00000368528 745 ntBASIC15.71■□□□□ 0.11
LIG3P49916 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
LIG3P49916 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.71■□□□□ 0.11
LIG3P49916 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 NME2P1-201ENST00000426182 414 ntBASIC15.71■□□□□ 0.11
LIG3P49916 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.71■□□□□ 0.11
LIG3P49916 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.71■□□□□ 0.11
LIG3P49916 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.71■□□□□ 0.11
LIG3P49916 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.71■□□□□ 0.11
LIG3P49916 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.71■□□□□ 0.11
LIG3P49916 CTBP2P3-201ENST00000585629 1255 ntBASIC15.71■□□□□ 0.11
LIG3P49916 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.71■□□□□ 0.11
LIG3P49916 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.71■□□□□ 0.11
LIG3P49916 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.71■□□□□ 0.11
LIG3P49916 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
LIG3P49916 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LIG3P49916 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LIG3P49916 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LIG3P49916 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.71■□□□□ 0.1
LIG3P49916 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LIG3P49916 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
LIG3P49916 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LIG3P49916 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
LIG3P49916 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC15.7■□□□□ 0.1
LIG3P49916 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.7■□□□□ 0.1
LIG3P49916 AP006294.1-201ENST00000415407 339 ntBASIC15.7■□□□□ 0.1
LIG3P49916 COX5BP8-201ENST00000416911 349 ntBASIC15.7■□□□□ 0.1
LIG3P49916 GAPDHP21-201ENST00000450301 1010 ntBASIC15.7■□□□□ 0.1
LIG3P49916 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.7■□□□□ 0.1
LIG3P49916 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.7■□□□□ 0.1
LIG3P49916 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.7■□□□□ 0.1
LIG3P49916 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 AP001267.2-201ENST00000532619 2086 ntBASIC15.7■□□□□ 0.1
LIG3P49916 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC15.7■□□□□ 0.1
LIG3P49916 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LIG3P49916 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
LIG3P49916 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms