Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 AL583810.1-201ENST00000553344 1045 ntBASIC15.3■□□□□ 0.04
USP29Q9HBJ7 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 AC005252.3-201ENST00000623855 2258 ntBASIC15.3■□□□□ 0.04
USP29Q9HBJ7 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.3■□□□□ 0.04
USP29Q9HBJ7 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 POM121L8P-201ENST00000417732 1281 ntBASIC15.29■□□□□ 0.04
USP29Q9HBJ7 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 POM121L9P-203ENST00000441984 1285 ntBASIC15.29■□□□□ 0.04
USP29Q9HBJ7 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 AL355994.2-201ENST00000447882 704 ntBASIC15.29■□□□□ 0.04
USP29Q9HBJ7 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 AP001889.1-201ENST00000525414 633 ntBASIC15.29■□□□□ 0.04
USP29Q9HBJ7 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 MYADML-201ENST00000474610 2147 ntBASIC15.29■□□□□ 0.04
USP29Q9HBJ7 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 AC092135.3-201ENST00000624151 1846 ntBASIC15.29■□□□□ 0.04
USP29Q9HBJ7 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.29■□□□□ 0.04
USP29Q9HBJ7 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.28■□□□□ 0.04
USP29Q9HBJ7 CLUHP2-201ENST00000426660 1303 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms