Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 RNA5SP486-201ENST00000515961 83 ntBASIC15.07■□□□□ 0
SHROOM3Q8TF72 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.07■□□□□ 0
SHROOM3Q8TF72 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 SHC1P1-201ENST00000425230 1745 ntBASIC15.07■□□□□ 0
SHROOM3Q8TF72 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 PUDPP3-201ENST00000445368 636 ntBASIC15.07■□□□□ 0
SHROOM3Q8TF72 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 AC010328.2-201ENST00000597698 1111 ntBASIC15.07■□□□□ 0
SHROOM3Q8TF72 SPCS2P2-201ENST00000603270 608 ntBASIC15.07■□□□□ 0
SHROOM3Q8TF72 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.07■□□□□ 0
SHROOM3Q8TF72 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SHROOM3Q8TF72 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 HSPB1P2-201ENST00000448722 546 ntBASIC15.06■□□□□ 0
SHROOM3Q8TF72 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 AC152010.1-201ENST00000415779 2006 ntBASIC15.06■□□□□ 0
SHROOM3Q8TF72 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.06■□□□□ 0
SHROOM3Q8TF72 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHROOM3Q8TF72 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms