Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 STRN-202ENST00000379213 2254 ntTSL 5 BASIC10.53□□□□□ -0.72
CKS1BP61024 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 ELP6-209ENST00000446787 894 ntTSL 3 BASIC10.53□□□□□ -0.72
CKS1BP61024 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC10.53□□□□□ -0.72
CKS1BP61024 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC10.53□□□□□ -0.72
CKS1BP61024 UNC93B7-201ENST00000509439 705 ntBASIC10.53□□□□□ -0.72
CKS1BP61024 MAL2-202ENST00000531508 892 ntTSL 3 BASIC10.53□□□□□ -0.72
CKS1BP61024 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC10.53□□□□□ -0.72
CKS1BP61024 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC10.53□□□□□ -0.72
CKS1BP61024 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 MIR4313-201ENST00000580760 101 ntBASIC10.53□□□□□ -0.72
CKS1BP61024 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 CALM3-211ENST00000598871 561 ntTSL 4 BASIC10.53□□□□□ -0.72
CKS1BP61024 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC10.53□□□□□ -0.72
CKS1BP61024 AC116407.3-201ENST00000623905 1129 ntBASIC10.53□□□□□ -0.72
CKS1BP61024 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC10.53□□□□□ -0.72
CKS1BP61024 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
CKS1BP61024 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC10.53□□□□□ -0.72
CKS1BP61024 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 EPN3-201ENST00000268933 4071 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 MUC20-205ENST00000447234 2589 ntAPPRIS P2 TSL 5 BASIC10.53□□□□□ -0.72
CKS1BP61024 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
CKS1BP61024 KIF25-AS1-202ENST00000456585 2795 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC10.53□□□□□ -0.72
CKS1BP61024 TSN-212ENST00000536142 3328 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC10.53□□□□□ -0.72
CKS1BP61024 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
CKS1BP61024 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
CKS1BP61024 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
CKS1BP61024 CILP-201ENST00000261883 5695 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
CKS1BP61024 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC10.52□□□□□ -0.72
CKS1BP61024 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.72
CKS1BP61024 TRUB2-201ENST00000372890 5719 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
CKS1BP61024 AKAP13-202ENST00000394510 9128 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.72
CKS1BP61024 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC10.52□□□□□ -0.72
CKS1BP61024 MAGEL2-201ENST00000532292 4298 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
CKS1BP61024 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 ACVRL1-206ENST00000550683 4121 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
CKS1BP61024 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC10.52□□□□□ -0.73
CKS1BP61024 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 CSF3-203ENST00000394148 622 ntTSL 3 BASIC10.52□□□□□ -0.73
CKS1BP61024 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 FAAHP1-202ENST00000446499 1238 ntBASIC10.52□□□□□ -0.73
CKS1BP61024 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 AL139010.1-201ENST00000454878 894 ntBASIC10.52□□□□□ -0.73
CKS1BP61024 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 CCDC74BP1-201ENST00000508880 1123 ntBASIC10.52□□□□□ -0.73
CKS1BP61024 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC10.52□□□□□ -0.73
CKS1BP61024 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC10.52□□□□□ -0.73
CKS1BP61024 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 AP001005.1-201ENST00000571755 1248 ntBASIC10.52□□□□□ -0.73
CKS1BP61024 LITAF-211ENST00000572255 516 ntTSL 4 BASIC10.52□□□□□ -0.73
CKS1BP61024 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC10.52□□□□□ -0.73
CKS1BP61024 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC10.52□□□□□ -0.73
CKS1BP61024 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC10.52□□□□□ -0.73
CKS1BP61024 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC10.52□□□□□ -0.73
CKS1BP61024 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC10.52□□□□□ -0.73
CKS1BP61024 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC10.52□□□□□ -0.73
CKS1BP61024 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CKS1BP61024 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms