Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
EPHB3P54753 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.41■□□□□ 0.06
EPHB3P54753 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC15.41■□□□□ 0.06
EPHB3P54753 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC15.41■□□□□ 0.06
EPHB3P54753 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.41■□□□□ 0.06
EPHB3P54753 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.41■□□□□ 0.06
EPHB3P54753 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.41■□□□□ 0.06
EPHB3P54753 FTLP1-201ENST00000449155 526 ntBASIC15.41■□□□□ 0.06
EPHB3P54753 AC073150.1-201ENST00000450406 1084 ntBASIC15.41■□□□□ 0.06
EPHB3P54753 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.41■□□□□ 0.06
EPHB3P54753 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.41■□□□□ 0.06
EPHB3P54753 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.41■□□□□ 0.06
EPHB3P54753 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC15.41■□□□□ 0.06
EPHB3P54753 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.41■□□□□ 0.06
EPHB3P54753 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.41■□□□□ 0.06
EPHB3P54753 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.41■□□□□ 0.06
EPHB3P54753 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
EPHB3P54753 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
EPHB3P54753 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 AC009093.10-201ENST00000641956 1442 ntBASIC15.41■□□□□ 0.06
EPHB3P54753 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
EPHB3P54753 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.41■□□□□ 0.06
EPHB3P54753 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
EPHB3P54753 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
EPHB3P54753 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.4■□□□□ 0.06
EPHB3P54753 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
EPHB3P54753 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 TMBIM7P-202ENST00000641474 1516 ntBASIC15.4■□□□□ 0.06
EPHB3P54753 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.4■□□□□ 0.06
EPHB3P54753 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.4■□□□□ 0.06
EPHB3P54753 TMEM198B-204ENST00000484016 896 ntBASIC15.4■□□□□ 0.06
EPHB3P54753 AC116345.2-201ENST00000512837 523 ntBASIC15.4■□□□□ 0.06
EPHB3P54753 IGLV3-15-201ENST00000518356 244 ntBASIC15.4■□□□□ 0.06
EPHB3P54753 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.4■□□□□ 0.06
EPHB3P54753 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 AC006453.1-201ENST00000636037 1257 ntBASIC15.4■□□□□ 0.06
EPHB3P54753 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.4■□□□□ 0.06
EPHB3P54753 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
EPHB3P54753 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.4■□□□□ 0.06
EPHB3P54753 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.06
EPHB3P54753 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.39■□□□□ 0.06
EPHB3P54753 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
EPHB3P54753 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
EPHB3P54753 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
EPHB3P54753 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.39■□□□□ 0.05
EPHB3P54753 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.39■□□□□ 0.05
EPHB3P54753 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.39■□□□□ 0.05
EPHB3P54753 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
EPHB3P54753 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.39■□□□□ 0.05
EPHB3P54753 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
EPHB3P54753 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
EPHB3P54753 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
EPHB3P54753 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
EPHB3P54753 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
EPHB3P54753 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.39■□□□□ 0.05
EPHB3P54753 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.39■□□□□ 0.05
EPHB3P54753 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
EPHB3P54753 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
EPHB3P54753 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms