Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CXCL12P48061 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CXCL12P48061 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC14.56□□□□□ -0.08
CXCL12P48061 AQP7P5-201ENST00000428759 1049 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 ST13P19-201ENST00000442505 1124 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 CSNK1G2P1-201ENST00000442675 955 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 AQP7P4-201ENST00000447083 1042 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 AQP7P2-201ENST00000453967 1041 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC14.56□□□□□ -0.08
CXCL12P48061 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 RN7SL357P-201ENST00000581065 298 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 AL591471.1-201ENST00000621855 229 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 AQP7P3-201ENST00000624547 1041 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 AC092135.3-201ENST00000624151 1846 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.56□□□□□ -0.08
CXCL12P48061 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 AP002353.1-201ENST00000528257 1599 ntBASIC14.56□□□□□ -0.08
CXCL12P48061 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.56□□□□□ -0.08
CXCL12P48061 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CXCL12P48061 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.55□□□□□ -0.08
CXCL12P48061 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
CXCL12P48061 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC14.55□□□□□ -0.08
CXCL12P48061 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC14.55□□□□□ -0.08
CXCL12P48061 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 KRT17P4-201ENST00000429445 819 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC14.55□□□□□ -0.08
CXCL12P48061 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 AC093909.3-201ENST00000504783 336 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 FAM86KP-201ENST00000509817 987 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 FAM86B3P-203ENST00000523992 854 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 AC068867.1-201ENST00000559855 150 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC14.55□□□□□ -0.08
CXCL12P48061 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC14.55□□□□□ -0.08
CXCL12P48061 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 SIGLEC22P-201ENST00000599104 714 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC14.55□□□□□ -0.08
CXCL12P48061 AP003392.6-201ENST00000607709 325 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 AC002044.2-201ENST00000624910 970 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms