Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXN3O00409 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.88■□□□□ 0.13
FOXN3O00409 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
FOXN3O00409 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXN3O00409 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.88■□□□□ 0.13
FOXN3O00409 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
FOXN3O00409 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
FOXN3O00409 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 AC139712.1-201ENST00000378256 1875 ntBASIC15.88■□□□□ 0.13
FOXN3O00409 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
FOXN3O00409 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.88■□□□□ 0.13
FOXN3O00409 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXN3O00409 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
FOXN3O00409 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.87■□□□□ 0.13
FOXN3O00409 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
FOXN3O00409 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.87■□□□□ 0.13
FOXN3O00409 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
FOXN3O00409 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.87■□□□□ 0.13
FOXN3O00409 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
FOXN3O00409 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
FOXN3O00409 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
FOXN3O00409 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.87■□□□□ 0.13
FOXN3O00409 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.87■□□□□ 0.13
FOXN3O00409 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 COX5BP8-201ENST00000416911 349 ntBASIC15.87■□□□□ 0.13
FOXN3O00409 NME2P1-201ENST00000426182 414 ntBASIC15.87■□□□□ 0.13
FOXN3O00409 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 FAM197Y7-201ENST00000432892 766 ntBASIC15.87■□□□□ 0.13
FOXN3O00409 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.87■□□□□ 0.13
FOXN3O00409 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.87■□□□□ 0.13
FOXN3O00409 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.87■□□□□ 0.13
FOXN3O00409 AL022328.1-201ENST00000610050 478 ntBASIC15.87■□□□□ 0.13
FOXN3O00409 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.13
FOXN3O00409 AC126755.1-201ENST00000525846 6405 ntBASIC15.87■□□□□ 0.13
FOXN3O00409 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
FOXN3O00409 C8orf49-201ENST00000525043 1968 ntBASIC15.87■□□□□ 0.13
FOXN3O00409 AC011498.7-201ENST00000624986 2027 ntBASIC15.87■□□□□ 0.13
FOXN3O00409 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.87■□□□□ 0.13
FOXN3O00409 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXN3O00409 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.86■□□□□ 0.13
FOXN3O00409 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.86■□□□□ 0.13
FOXN3O00409 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXN3O00409 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.86■□□□□ 0.13
FOXN3O00409 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.86■□□□□ 0.13
FOXN3O00409 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
FOXN3O00409 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
FOXN3O00409 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
FOXN3O00409 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.86■□□□□ 0.13
FOXN3O00409 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 C2orf27AP3-201ENST00000434123 579 ntBASIC15.86■□□□□ 0.13
FOXN3O00409 AC016694.1-201ENST00000434179 700 ntBASIC15.86■□□□□ 0.13
FOXN3O00409 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXN3O00409 ALG3P1-201ENST00000508806 1114 ntBASIC15.86■□□□□ 0.13
FOXN3O00409 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.86■□□□□ 0.13
FOXN3O00409 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.86■□□□□ 0.13
FOXN3O00409 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXN3O00409 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 AL354718.3-201ENST00000616414 581 ntBASIC15.86■□□□□ 0.13
FOXN3O00409 CR382287.1-201ENST00000623954 586 ntBASIC15.86■□□□□ 0.13
FOXN3O00409 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXN3O00409 AL358472.5-202ENST00000641448 1267 ntBASIC15.86■□□□□ 0.13
FOXN3O00409 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXN3O00409 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
FOXN3O00409 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms