Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 OR2I1P-209ENST00000641730 5365 ntBASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 AC003102.2-201ENST00000589195 1469 ntBASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 SALL4P5-201ENST00000419001 1760 ntBASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 PFN1P12-201ENST00000455938 534 ntBASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 PPY2P-201ENST00000582808 702 ntBASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 AC113367.3-201ENST00000508316 1912 ntBASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL4A3BPQ9Y5P4 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AC015818.8-201ENST00000587907 1519 ntBASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 BTBD6P1-201ENST00000412176 1267 ntBASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 MTX1P1-201ENST00000440904 838 ntBASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 ZACNP1-201ENST00000612259 710 ntBASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AL138725.1-201ENST00000407347 1314 ntBASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 FKBP4P6-201ENST00000457486 1332 ntBASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 AL023775.1-201ENST00000454907 1746 ntBASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 SNX18-202ENST00000343017 3140 ntBASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL4A3BPQ9Y5P4 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
COL4A3BPQ9Y5P4 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms