Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 AF186996.4-201ENST00000467186 377 ntBASIC14.06□□□□□ -0.16
NR1H4Q96RI1 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 AC061975.2-201ENST00000581722 295 ntBASIC14.06□□□□□ -0.16
NR1H4Q96RI1 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 TRIM80P-201ENST00000455685 2848 ntBASIC14.06□□□□□ -0.16
NR1H4Q96RI1 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
NR1H4Q96RI1 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 RN7SL832P-201ENST00000607781 1756 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 RPS2P28-201ENST00000314255 741 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 MRPL20P1-201ENST00000400819 433 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 HNRNPDP1-201ENST00000439535 754 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 AC012640.2-201ENST00000561606 901 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 AC024267.1-201ENST00000582320 895 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 AC004790.2-201ENST00000623588 572 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 TP73-AS1-207ENST00000624167 988 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 AC134407.3-201ENST00000624035 2139 ntBASIC14.05□□□□□ -0.16
NR1H4Q96RI1 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NR1H4Q96RI1 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NR1H4Q96RI1 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms