Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 AL354702.1-201ENST00000442006 1960 ntBASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 INTS4P2-202ENST00000614726 2019 ntBASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.05□□□□□ -0.32
CCDC54Q8NEL0 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 AL589987.1-201ENST00000453380 819 ntBASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 AC055876.2-201ENST00000531834 546 ntBASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 AC120045.2-201ENST00000567334 178 ntBASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 AL390955.2-201ENST00000603032 514 ntBASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 PTENP1-202ENST00000532280 3996 ntBASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 INTS4P1-203ENST00000641008 3683 ntBASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CCDC54Q8NEL0 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AGGF1P1-201ENST00000509500 2073 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms