Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC103988.2-201ENST00000561804 725 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 AC005357.2-202ENST00000590507 1060 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 AC009084.3-201ENST00000623356 437 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 AC025271.4-201ENST00000621477 1726 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA4P78363 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
ABCA4P78363 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
ABCA4P78363 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.78□□□□□ -0.36
ABCA4P78363 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 AC144522.1-201ENST00000625111 1658 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
ABCA4P78363 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
ABCA4P78363 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 AC097065.1-201ENST00000425737 517 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 AC079112.1-201ENST00000454972 939 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA4P78363 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC12.78□□□□□ -0.36
ABCA4P78363 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA4P78363 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 SNORD3B-2-202ENST00000571722 791 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 AC138696.2-201ENST00000607376 223 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
ABCA4P78363 AGK-211ENST00000629555 2765 ntTSL 5 BASIC12.78□□□□□ -0.36
ABCA4P78363 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA4P78363 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA4P78363 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 AC074138.1-201ENST00000611182 1303 ntBASIC12.78□□□□□ -0.36
ABCA4P78363 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ABCA4P78363 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.78□□□□□ -0.36
ABCA4P78363 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
ABCA4P78363 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.77□□□□□ -0.36
ABCA4P78363 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
ABCA4P78363 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
ABCA4P78363 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC12.77□□□□□ -0.36
ABCA4P78363 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
ABCA4P78363 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC12.77□□□□□ -0.36
ABCA4P78363 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC12.77□□□□□ -0.36
ABCA4P78363 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.77□□□□□ -0.36
ABCA4P78363 AC026434.2-201ENST00000506094 1078 ntBASIC12.77□□□□□ -0.36
ABCA4P78363 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC12.77□□□□□ -0.36
ABCA4P78363 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC12.77□□□□□ -0.36
ABCA4P78363 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC12.77□□□□□ -0.36
ABCA4P78363 AC005962.1-201ENST00000584100 773 ntBASIC12.77□□□□□ -0.36
ABCA4P78363 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ABCA4P78363 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.77□□□□□ -0.36
ABCA4P78363 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
ABCA4P78363 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.77□□□□□ -0.37
ABCA4P78363 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 AC003102.2-201ENST00000589195 1469 ntBASIC12.77□□□□□ -0.37
ABCA4P78363 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
ABCA4P78363 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
ABCA4P78363 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.77□□□□□ -0.37
ABCA4P78363 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
ABCA4P78363 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 PCDHA3-202ENST00000532566 4594 ntBASIC12.77□□□□□ -0.37
ABCA4P78363 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.37
ABCA4P78363 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
ABCA4P78363 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
ABCA4P78363 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
ABCA4P78363 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
ABCA4P78363 AC011742.3-201ENST00000439053 820 ntBASIC12.77□□□□□ -0.37
ABCA4P78363 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 AC091951.1-201ENST00000512854 2465 ntBASIC12.77□□□□□ -0.37
ABCA4P78363 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC12.77□□□□□ -0.37
ABCA4P78363 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC12.77□□□□□ -0.37
ABCA4P78363 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.77□□□□□ -0.37
ABCA4P78363 RTN3P1-201ENST00000536295 711 ntBASIC12.77□□□□□ -0.37
ABCA4P78363 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.77□□□□□ -0.37
ABCA4P78363 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.77□□□□□ -0.37
ABCA4P78363 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
ABCA4P78363 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms