Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
COL5A1P20908 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
COL5A1P20908 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.89□□□□□ -0.19
COL5A1P20908 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 COX20P1-201ENST00000366529 357 ntBASIC13.89□□□□□ -0.19
COL5A1P20908 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC13.89□□□□□ -0.19
COL5A1P20908 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL5A1P20908 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 AL135901.1-201ENST00000451812 333 ntBASIC13.89□□□□□ -0.19
COL5A1P20908 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.89□□□□□ -0.19
COL5A1P20908 RN7SL23P-201ENST00000484055 275 ntBASIC13.89□□□□□ -0.19
COL5A1P20908 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC13.89□□□□□ -0.19
COL5A1P20908 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.89□□□□□ -0.19
COL5A1P20908 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC13.89□□□□□ -0.19
COL5A1P20908 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.89□□□□□ -0.19
COL5A1P20908 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.89□□□□□ -0.19
COL5A1P20908 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.89□□□□□ -0.19
COL5A1P20908 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.89□□□□□ -0.19
COL5A1P20908 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
COL5A1P20908 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.89□□□□□ -0.19
COL5A1P20908 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
COL5A1P20908 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
COL5A1P20908 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
COL5A1P20908 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL5A1P20908 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC13.88□□□□□ -0.19
COL5A1P20908 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 LINC00265-2P-201ENST00000413372 782 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC13.88□□□□□ -0.19
COL5A1P20908 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC13.88□□□□□ -0.19
COL5A1P20908 DNM1P51-201ENST00000558149 522 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC13.88□□□□□ -0.19
COL5A1P20908 RN7SL357P-201ENST00000581065 298 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 AC010976.2-201ENST00000609697 852 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 AL591122.2-201ENST00000624125 1853 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.88□□□□□ -0.19
COL5A1P20908 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
COL5A1P20908 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL5A1P20908 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 AC025183.3-201ENST00000623526 1482 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 FAM90A21P-201ENST00000510875 1396 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 FAM90A15P-201ENST00000514465 1395 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 FAM90A6P-201ENST00000515148 1394 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 FAM90A16P-201ENST00000526662 1395 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 FAM90A9P-201ENST00000527940 1395 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 FAM90A5P-201ENST00000528738 1395 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 FAM90A14P-201ENST00000530386 1395 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 FAM90A13P-201ENST00000534703 1395 ntBASIC13.88□□□□□ -0.19
COL5A1P20908 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC13.88□□□□□ -0.19
COL5A1P20908 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.88□□□□□ -0.19
COL5A1P20908 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.88□□□□□ -0.19
COL5A1P20908 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL5A1P20908 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 RPL35P9-201ENST00000446059 350 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 IGHV1-12-201ENST00000518307 205 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 RPS5-204ENST00000598098 536 ntTSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 AGGF1P1-201ENST00000509500 2073 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL5A1P20908 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 AC006372.4-201ENST00000624122 1543 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms