Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.01□□□□□ -0.17
LDB3O75112 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.01□□□□□ -0.17
LDB3O75112 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.01□□□□□ -0.17
LDB3O75112 MIR4683-201ENST00000579659 81 ntBASIC14.01□□□□□ -0.17
LDB3O75112 RN7SL713P-201ENST00000582127 302 ntBASIC14.01□□□□□ -0.17
LDB3O75112 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.01□□□□□ -0.17
LDB3O75112 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.01□□□□□ -0.17
LDB3O75112 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.01□□□□□ -0.17
LDB3O75112 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 AC232323.1-201ENST00000540724 2099 ntBASIC14.01□□□□□ -0.17
LDB3O75112 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
LDB3O75112 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14□□□□□ -0.17
LDB3O75112 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LDB3O75112 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14□□□□□ -0.17
LDB3O75112 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14□□□□□ -0.17
LDB3O75112 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 AL136172.1-201ENST00000598590 1394 ntBASIC14□□□□□ -0.17
LDB3O75112 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14□□□□□ -0.17
LDB3O75112 AC097359.2-201ENST00000604992 2389 ntBASIC14□□□□□ -0.17
LDB3O75112 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
LDB3O75112 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14□□□□□ -0.17
LDB3O75112 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 AC004945.1-201ENST00000416738 983 ntBASIC14□□□□□ -0.17
LDB3O75112 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14□□□□□ -0.17
LDB3O75112 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 AC131206.1-201ENST00000538078 1211 ntBASIC14□□□□□ -0.17
LDB3O75112 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
LDB3O75112 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14□□□□□ -0.17
LDB3O75112 AC023310.1-201ENST00000554836 735 ntBASIC14□□□□□ -0.17
LDB3O75112 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14□□□□□ -0.17
LDB3O75112 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 AC008687.7-202ENST00000637404 953 ntBASIC14□□□□□ -0.17
LDB3O75112 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14□□□□□ -0.17
LDB3O75112 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14□□□□□ -0.17
LDB3O75112 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14□□□□□ -0.17
LDB3O75112 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14□□□□□ -0.17
LDB3O75112 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
LDB3O75112 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LDB3O75112 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14□□□□□ -0.17
LDB3O75112 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14□□□□□ -0.17
LDB3O75112 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14□□□□□ -0.17
LDB3O75112 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14□□□□□ -0.17
LDB3O75112 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LDB3O75112 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.99□□□□□ -0.17
LDB3O75112 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms