Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 AP000354.1-201ENST00000396982 456 ntBASIC11.23□□□□□ -0.61
COL6A5A8TX70 AL137244.1-201ENST00000422931 865 ntBASIC11.23□□□□□ -0.61
COL6A5A8TX70 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 AC087203.1-201ENST00000532111 1181 ntBASIC11.23□□□□□ -0.61
COL6A5A8TX70 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 AC106785.2-201ENST00000564385 1319 ntBASIC11.23□□□□□ -0.61
COL6A5A8TX70 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 AC019109.1-201ENST00000401725 1874 ntBASIC11.23□□□□□ -0.61
COL6A5A8TX70 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 CCNL2P1-201ENST00000512846 969 ntBASIC11.23□□□□□ -0.61
COL6A5A8TX70 CLPP-205ENST00000596605 646 ntTSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 ESR1-214ENST00000638569 132 ntTSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 OR6D1P-203ENST00000641209 4860 ntBASIC11.23□□□□□ -0.61
COL6A5A8TX70 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 SALL4P5-201ENST00000419001 1760 ntBASIC11.23□□□□□ -0.61
COL6A5A8TX70 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
COL6A5A8TX70 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
COL6A5A8TX70 LINC00265-2P-201ENST00000413372 782 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 HNRNPA1P21-201ENST00000424115 961 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 RNU1-80P-201ENST00000459500 161 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 SNRPD2P2-201ENST00000473818 333 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 AC099328.1-201ENST00000498809 1030 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 GCOM2-201ENST00000509133 1104 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 GAS7-216ENST00000583882 553 ntTSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 AL121753.2-201ENST00000624581 1461 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 SAT1-201ENST00000379251 801 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 SAT1-202ENST00000379253 909 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 SAT1-203ENST00000379254 868 ntTSL 3 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 RN7SL838P-201ENST00000481676 295 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 RN7SL87P-201ENST00000497657 288 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 MIR5193-201ENST00000584510 109 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC11.22□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms