Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.98□□□□□ -0.01
DKK3Q9UBP4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.98□□□□□ -0.01
DKK3Q9UBP4 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.98□□□□□ -0.01
DKK3Q9UBP4 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
DKK3Q9UBP4 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.98□□□□□ -0.01
DKK3Q9UBP4 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
DKK3Q9UBP4 AC015656.1-201ENST00000624209 3578 ntBASIC14.98□□□□□ -0.01
DKK3Q9UBP4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 POM121L10P-201ENST00000436994 1285 ntBASIC14.97□□□□□ -0.01
DKK3Q9UBP4 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.97□□□□□ -0.01
DKK3Q9UBP4 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 AC104982.3-201ENST00000581995 514 ntBASIC14.97□□□□□ -0.01
DKK3Q9UBP4 AL136301.1-201ENST00000615830 422 ntBASIC14.97□□□□□ -0.01
DKK3Q9UBP4 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.97□□□□□ -0.01
DKK3Q9UBP4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC14.96□□□□□ -0.01
DKK3Q9UBP4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms