Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 REXO1L4P-201ENST00000605109 1937 ntBASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC152010.1-201ENST00000415779 2006 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC211486.1-202ENST00000416371 468 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AL080243.2-201ENST00000418783 582 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 RN7SL618P-201ENST00000477850 296 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC211476.1-201ENST00000503899 468 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AP001059.3-201ENST00000619053 235 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AF228730.6-201ENST00000641497 218 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC084121.3-201ENST00000641716 218 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 PRICKLE1-203ENST00000455697 4277 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AL356585.2-201ENST00000625078 2396 ntBASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC12.93□□□□□ -0.34
CHMP1AQ9HD42 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.92□□□□□ -0.34
CHMP1AQ9HD42 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms