Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 EIF3FP3-201ENST00000434851 1086 ntBASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 AC092658.1-201ENST00000505836 891 ntBASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP4CQ96CF2 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AC079781.5-202ENST00000641784 3743 ntBASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AL139094.1-201ENST00000405549 1188 ntBASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AC114812.1-204ENST00000449669 728 ntBASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AP000812.2-201ENST00000538934 718 ntBASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 BANP-203ENST00000393207 2438 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CHMP4CQ96CF2 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 AC055811.4-201ENST00000624039 1754 ntBASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 HLA-K-203ENST00000430151 1046 ntBASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 RPL13AP20-201ENST00000459725 609 ntBASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms