Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 OLA1P2-201ENST00000395519 1264 ntBASIC17.12■□□□□ 0.33
CTCFP49711 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC17.12■□□□□ 0.33
CTCFP49711 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC17.12■□□□□ 0.33
CTCFP49711 AL929302.1-201ENST00000426556 871 ntBASIC17.12■□□□□ 0.33
CTCFP49711 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC17.12■□□□□ 0.33
CTCFP49711 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CTCFP49711 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 AC142086.5-202ENST00000562500 217 ntBASIC17.12■□□□□ 0.33
CTCFP49711 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 AC140113.1-201ENST00000603467 169 ntBASIC17.12■□□□□ 0.33
CTCFP49711 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CTCFP49711 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.12■□□□□ 0.33
CTCFP49711 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.12■□□□□ 0.33
CTCFP49711 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.11■□□□□ 0.33
CTCFP49711 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.11■□□□□ 0.33
CTCFP49711 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.11■□□□□ 0.33
CTCFP49711 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.11■□□□□ 0.33
CTCFP49711 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC17.11■□□□□ 0.33
CTCFP49711 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CTCFP49711 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC17.11■□□□□ 0.33
CTCFP49711 AL451000.1-201ENST00000451300 1186 ntBASIC17.11■□□□□ 0.33
CTCFP49711 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC17.11■□□□□ 0.33
CTCFP49711 AC092612.1-201ENST00000514501 998 ntBASIC17.11■□□□□ 0.33
CTCFP49711 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CTCFP49711 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
CTCFP49711 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC17.11■□□□□ 0.33
CTCFP49711 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC17.11■□□□□ 0.33
CTCFP49711 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CTCFP49711 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
CTCFP49711 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CTCFP49711 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CTCFP49711 AC018892.3-201ENST00000623986 2499 ntBASIC17.11■□□□□ 0.33
CTCFP49711 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CTCFP49711 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.11■□□□□ 0.33
CTCFP49711 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.1■□□□□ 0.33
CTCFP49711 MARK2P16-201ENST00000605714 1723 ntBASIC17.1■□□□□ 0.33
CTCFP49711 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 RN7SKP109-201ENST00000410592 316 ntBASIC17.1■□□□□ 0.33
CTCFP49711 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.1■□□□□ 0.33
CTCFP49711 RN7SL582P-201ENST00000491078 279 ntBASIC17.1■□□□□ 0.33
CTCFP49711 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC17.1■□□□□ 0.33
CTCFP49711 TREHP1-201ENST00000531328 465 ntBASIC17.1■□□□□ 0.33
CTCFP49711 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.1■□□□□ 0.33
CTCFP49711 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CTCFP49711 GOLGA2P7-209ENST00000560408 745 ntBASIC17.1■□□□□ 0.33
CTCFP49711 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC17.1■□□□□ 0.33
CTCFP49711 MIR6720-201ENST00000611664 98 ntBASIC17.1■□□□□ 0.33
CTCFP49711 AC004466.2-201ENST00000614749 516 ntBASIC17.1■□□□□ 0.33
CTCFP49711 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.1■□□□□ 0.33
CTCFP49711 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CTCFP49711 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms