Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL5A1P20908 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL5A1P20908 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 FAU-202ENST00000434372 533 ntTSL 2 BASIC13.91□□□□□ -0.18
COL5A1P20908 AC098934.1-203ENST00000442868 1262 ntBASIC13.91□□□□□ -0.18
COL5A1P20908 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC13.91□□□□□ -0.18
COL5A1P20908 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 OR5BD1P-201ENST00000532527 817 ntBASIC13.91□□□□□ -0.18
COL5A1P20908 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC13.91□□□□□ -0.18
COL5A1P20908 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.91□□□□□ -0.18
COL5A1P20908 AC068867.1-201ENST00000559855 150 ntBASIC13.91□□□□□ -0.18
COL5A1P20908 AL118516.1-201ENST00000564152 670 ntBASIC13.91□□□□□ -0.18
COL5A1P20908 AL133467.4-201ENST00000602953 725 ntBASIC13.91□□□□□ -0.18
COL5A1P20908 AC007250.1-201ENST00000608934 338 ntBASIC13.91□□□□□ -0.18
COL5A1P20908 AC006158.1-201ENST00000610661 249 ntBASIC13.91□□□□□ -0.18
COL5A1P20908 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC13.91□□□□□ -0.18
COL5A1P20908 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.91□□□□□ -0.18
COL5A1P20908 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
COL5A1P20908 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.91□□□□□ -0.18
COL5A1P20908 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
COL5A1P20908 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.91□□□□□ -0.18
COL5A1P20908 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.91□□□□□ -0.18
COL5A1P20908 BRD7P5-201ENST00000299197 1822 ntBASIC13.91□□□□□ -0.18
COL5A1P20908 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.91□□□□□ -0.18
COL5A1P20908 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL5A1P20908 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
COL5A1P20908 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL5A1P20908 HCG27-204ENST00000424675 895 ntTSL 3 BASIC13.9□□□□□ -0.18
COL5A1P20908 CSNK1G2P1-201ENST00000442675 955 ntBASIC13.9□□□□□ -0.18
COL5A1P20908 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC13.9□□□□□ -0.18
COL5A1P20908 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL5A1P20908 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.9□□□□□ -0.18
COL5A1P20908 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 NAA40-205ENST00000539656 577 ntTSL 4 BASIC13.9□□□□□ -0.18
COL5A1P20908 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC13.9□□□□□ -0.18
COL5A1P20908 AC011471.3-201ENST00000623576 402 ntBASIC13.9□□□□□ -0.18
COL5A1P20908 ST5-261ENST00000626808 1071 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC13.9□□□□□ -0.18
COL5A1P20908 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC13.9□□□□□ -0.18
COL5A1P20908 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.9□□□□□ -0.18
COL5A1P20908 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL5A1P20908 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 AC144831.1-201ENST00000573312 2656 ntBASIC13.9□□□□□ -0.18
COL5A1P20908 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC13.9□□□□□ -0.18
COL5A1P20908 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL5A1P20908 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC13.9□□□□□ -0.18
COL5A1P20908 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC13.9□□□□□ -0.18
COL5A1P20908 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.9□□□□□ -0.18
COL5A1P20908 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.89□□□□□ -0.19
COL5A1P20908 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
COL5A1P20908 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.89□□□□□ -0.19
COL5A1P20908 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL5A1P20908 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms