Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC14.94□□□□□ -0.02
VCANP13611 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 MBP-230ENST00000528160 584 ntTSL 5 BASIC14.94□□□□□ -0.02
VCANP13611 AC003686.1-201ENST00000550956 1034 ntBASIC14.94□□□□□ -0.02
VCANP13611 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC14.94□□□□□ -0.02
VCANP13611 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC14.94□□□□□ -0.02
VCANP13611 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
VCANP13611 NR0B1-201ENST00000378963 475 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 FAM86JP-202ENST00000484500 988 ntBASIC14.94□□□□□ -0.02
VCANP13611 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC14.94□□□□□ -0.02
VCANP13611 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC14.94□□□□□ -0.02
VCANP13611 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VCANP13611 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 HNRNPA1P2-207ENST00000432375 960 ntBASIC14.93□□□□□ -0.02
VCANP13611 ASS1P2-201ENST00000439895 1223 ntBASIC14.93□□□□□ -0.02
VCANP13611 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC14.93□□□□□ -0.02
VCANP13611 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.93□□□□□ -0.02
VCANP13611 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
VCANP13611 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
VCANP13611 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
VCANP13611 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
VCANP13611 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.93□□□□□ -0.02
VCANP13611 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 SNRPCP15-201ENST00000424055 192 ntBASIC14.93□□□□□ -0.02
VCANP13611 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC14.93□□□□□ -0.02
VCANP13611 AC004923.3-201ENST00000527532 355 ntBASIC14.93□□□□□ -0.02
VCANP13611 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC14.93□□□□□ -0.02
VCANP13611 AC010531.8-201ENST00000623341 685 ntBASIC14.93□□□□□ -0.02
VCANP13611 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.93□□□□□ -0.02
VCANP13611 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
VCANP13611 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
VCANP13611 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VCANP13611 SHMT1P1-201ENST00000419974 1312 ntBASIC14.93□□□□□ -0.02
VCANP13611 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
VCANP13611 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC14.93□□□□□ -0.02
VCANP13611 KRT8P2-201ENST00000556193 944 ntBASIC14.93□□□□□ -0.02
VCANP13611 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
VCANP13611 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC14.93□□□□□ -0.02
VCANP13611 AL590556.2-202ENST00000636906 844 ntBASIC14.93□□□□□ -0.02
VCANP13611 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
VCANP13611 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC14.92□□□□□ -0.02
VCANP13611 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 AC112694.1-202ENST00000540985 943 ntBASIC14.92□□□□□ -0.02
VCANP13611 NAT9-204ENST00000578822 839 ntTSL 3 BASIC14.92□□□□□ -0.02
VCANP13611 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.92□□□□□ -0.02
VCANP13611 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.92□□□□□ -0.02
VCANP13611 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.92□□□□□ -0.02
VCANP13611 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
VCANP13611 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.92□□□□□ -0.02
VCANP13611 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
VCANP13611 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms