Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.11□□□□□ -0.15
SOX3P41225 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 CTBP2P5-201ENST00000454986 1264 ntBASIC14.11□□□□□ -0.15
SOX3P41225 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 AC104989.1-201ENST00000519711 778 ntBASIC14.11□□□□□ -0.15
SOX3P41225 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SOX3P41225 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SOX3P41225 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SOX3P41225 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SOX3P41225 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SOX3P41225 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.1□□□□□ -0.15
SOX3P41225 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.1□□□□□ -0.15
SOX3P41225 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SOX3P41225 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 BX640514.1-201ENST00000583223 1918 ntBASIC14.1□□□□□ -0.15
SOX3P41225 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.1□□□□□ -0.15
SOX3P41225 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.1□□□□□ -0.15
SOX3P41225 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 AC114812.1-204ENST00000449669 728 ntBASIC14.1□□□□□ -0.15
SOX3P41225 KLF2P4-201ENST00000451959 1225 ntBASIC14.1□□□□□ -0.15
SOX3P41225 AC007551.1-201ENST00000457394 519 ntBASIC14.1□□□□□ -0.15
SOX3P41225 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.1□□□□□ -0.15
SOX3P41225 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SOX3P41225 GNRHR2-203ENST00000581100 1187 ntBASIC14.1□□□□□ -0.15
SOX3P41225 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.1□□□□□ -0.15
SOX3P41225 AC244669.2-201ENST00000612320 853 ntBASIC14.1□□□□□ -0.15
SOX3P41225 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 AC010327.5-201ENST00000586923 3061 ntBASIC14.1□□□□□ -0.15
SOX3P41225 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.1□□□□□ -0.15
SOX3P41225 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SOX3P41225 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.1□□□□□ -0.15
SOX3P41225 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.09□□□□□ -0.15
SOX3P41225 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 AC027601.5-201ENST00000624065 2482 ntBASIC14.09□□□□□ -0.15
SOX3P41225 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SOX3P41225 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SOX3P41225 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SOX3P41225 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.09□□□□□ -0.15
SOX3P41225 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SOX3P41225 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SOX3P41225 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.09□□□□□ -0.15
SOX3P41225 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms