Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGB1P09429 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB1P09429 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB1P09429 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
HMGB1P09429 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGB1P09429 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HMGB1P09429 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB1P09429 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HMGB1P09429 FAM8A4P-201ENST00000435433 1213 ntBASIC17.56■□□□□ 0.4
HMGB1P09429 AC007551.1-201ENST00000457394 519 ntBASIC17.56■□□□□ 0.4
HMGB1P09429 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
HMGB1P09429 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HMGB1P09429 AC103988.2-201ENST00000561804 725 ntBASIC17.56■□□□□ 0.4
HMGB1P09429 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB1P09429 AC105233.6-201ENST00000642093 218 ntBASIC17.56■□□□□ 0.4
HMGB1P09429 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGB1P09429 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
HMGB1P09429 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB1P09429 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGB1P09429 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGB1P09429 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGB1P09429 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 AC015688.4-201ENST00000580780 1647 ntBASIC17.55■□□□□ 0.4
HMGB1P09429 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 AC139712.1-201ENST00000378256 1875 ntBASIC17.55■□□□□ 0.4
HMGB1P09429 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
HMGB1P09429 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 PUDPP3-201ENST00000445368 636 ntBASIC17.55■□□□□ 0.4
HMGB1P09429 KRT17P7-201ENST00000451704 1104 ntBASIC17.55■□□□□ 0.4
HMGB1P09429 COX20P2-201ENST00000452636 358 ntBASIC17.55■□□□□ 0.4
HMGB1P09429 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.55■□□□□ 0.4
HMGB1P09429 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.55■□□□□ 0.4
HMGB1P09429 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.55■□□□□ 0.4
HMGB1P09429 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGB1P09429 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.55■□□□□ 0.4
HMGB1P09429 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.55■□□□□ 0.4
HMGB1P09429 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.55■□□□□ 0.4
HMGB1P09429 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGB1P09429 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGB1P09429 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGB1P09429 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 AC097376.2-205ENST00000610159 5334 ntBASIC17.55■□□□□ 0.4
HMGB1P09429 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGB1P09429 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGB1P09429 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB1P09429 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 HSPA7-201ENST00000445535 1927 ntBASIC17.55■□□□□ 0.4
HMGB1P09429 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB1P09429 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HMGB1P09429 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.54■□□□□ 0.4
HMGB1P09429 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGB1P09429 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB1P09429 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms