Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL161729.1-201ENST00000604104 1402 ntBASIC23.65■■□□□ 1.38
PCDH9Q9HC56 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PCDH9Q9HC56 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDH9Q9HC56 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.65■■□□□ 1.38
PCDH9Q9HC56 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.65■■□□□ 1.38
PCDH9Q9HC56 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.65■■□□□ 1.38
PCDH9Q9HC56 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
PCDH9Q9HC56 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
PCDH9Q9HC56 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
PCDH9Q9HC56 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
PCDH9Q9HC56 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
PCDH9Q9HC56 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PCDH9Q9HC56 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.64■■□□□ 1.37
PCDH9Q9HC56 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.64■■□□□ 1.37
PCDH9Q9HC56 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDH9Q9HC56 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDH9Q9HC56 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDH9Q9HC56 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.64■■□□□ 1.37
PCDH9Q9HC56 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.63■■□□□ 1.37
PCDH9Q9HC56 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDH9Q9HC56 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.63■■□□□ 1.37
PCDH9Q9HC56 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDH9Q9HC56 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDH9Q9HC56 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.63■■□□□ 1.37
PCDH9Q9HC56 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PCDH9Q9HC56 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
PCDH9Q9HC56 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDH9Q9HC56 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDH9Q9HC56 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDH9Q9HC56 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.61■■□□□ 1.37
PCDH9Q9HC56 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.61■■□□□ 1.37
PCDH9Q9HC56 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDH9Q9HC56 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 AC011551.1-201ENST00000614101 683 ntBASIC23.6■■□□□ 1.37
PCDH9Q9HC56 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.6■■□□□ 1.37
PCDH9Q9HC56 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 KRT18P24-201ENST00000344739 1156 ntBASIC23.59■■□□□ 1.37
PCDH9Q9HC56 RARRES2P1-201ENST00000474487 481 ntBASIC23.59■■□□□ 1.37
PCDH9Q9HC56 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 AC120024.1-201ENST00000562672 995 ntBASIC23.59■■□□□ 1.37
PCDH9Q9HC56 AC103724.3-201ENST00000564481 992 ntBASIC23.59■■□□□ 1.37
PCDH9Q9HC56 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PCDH9Q9HC56 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PCDH9Q9HC56 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
PCDH9Q9HC56 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.58■■□□□ 1.36
PCDH9Q9HC56 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
PCDH9Q9HC56 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDH9Q9HC56 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
PCDH9Q9HC56 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PCDH9Q9HC56 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.57■■□□□ 1.36
PCDH9Q9HC56 THA1P-201ENST00000590384 1145 ntBASIC23.57■■□□□ 1.36
PCDH9Q9HC56 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
PCDH9Q9HC56 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDH9Q9HC56 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PCDH9Q9HC56 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDH9Q9HC56 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.56■■□□□ 1.36
PCDH9Q9HC56 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDH9Q9HC56 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDH9Q9HC56 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.56■■□□□ 1.36
PCDH9Q9HC56 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.56■■□□□ 1.36
PCDH9Q9HC56 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PCDH9Q9HC56 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.56■■□□□ 1.36
PCDH9Q9HC56 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
PCDH9Q9HC56 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.55■■□□□ 1.36
PCDH9Q9HC56 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PCDH9Q9HC56 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.54■■□□□ 1.36
PCDH9Q9HC56 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PCDH9Q9HC56 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PCDH9Q9HC56 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms