Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC25.69■■□□□ 1.7
UPF3AQ9H1J1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.69■■□□□ 1.7
UPF3AQ9H1J1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.69■■□□□ 1.7
UPF3AQ9H1J1 AC136469.2-201ENST00000623944 1028 ntBASIC25.69■■□□□ 1.7
UPF3AQ9H1J1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.69■■□□□ 1.7
UPF3AQ9H1J1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
UPF3AQ9H1J1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
UPF3AQ9H1J1 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 AL022069.1-201ENST00000568025 1636 ntBASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 AC099791.1-201ENST00000416440 715 ntBASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 AL162430.1-201ENST00000480705 870 ntBASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 AC241377.3-202ENST00000626088 1088 ntBASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 AC241585.3-202ENST00000628937 1088 ntBASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 AC245100.8-202ENST00000629247 1058 ntBASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
UPF3AQ9H1J1 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
UPF3AQ9H1J1 IRS3P-201ENST00000223076 1006 ntBASIC25.67■■□□□ 1.7
UPF3AQ9H1J1 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.67■■□□□ 1.7
UPF3AQ9H1J1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
UPF3AQ9H1J1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
UPF3AQ9H1J1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
UPF3AQ9H1J1 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.66■■□□□ 1.7
UPF3AQ9H1J1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
UPF3AQ9H1J1 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
UPF3AQ9H1J1 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
UPF3AQ9H1J1 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
UPF3AQ9H1J1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
UPF3AQ9H1J1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.65■■□□□ 1.7
UPF3AQ9H1J1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.65■■□□□ 1.7
UPF3AQ9H1J1 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
UPF3AQ9H1J1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
UPF3AQ9H1J1 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
UPF3AQ9H1J1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
UPF3AQ9H1J1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.64■■□□□ 1.7
UPF3AQ9H1J1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.64■■□□□ 1.7
UPF3AQ9H1J1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.64■■□□□ 1.7
UPF3AQ9H1J1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
UPF3AQ9H1J1 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
UPF3AQ9H1J1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
UPF3AQ9H1J1 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
UPF3AQ9H1J1 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.63■■□□□ 1.69
UPF3AQ9H1J1 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.63■■□□□ 1.69
UPF3AQ9H1J1 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
UPF3AQ9H1J1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
UPF3AQ9H1J1 AC006455.2-201ENST00000429931 906 ntBASIC25.63■■□□□ 1.69
UPF3AQ9H1J1 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
UPF3AQ9H1J1 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
UPF3AQ9H1J1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
UPF3AQ9H1J1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
UPF3AQ9H1J1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.62■■□□□ 1.69
UPF3AQ9H1J1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC25.62■■□□□ 1.69
UPF3AQ9H1J1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
UPF3AQ9H1J1 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
UPF3AQ9H1J1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.61■■□□□ 1.69
UPF3AQ9H1J1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
UPF3AQ9H1J1 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.61■■□□□ 1.69
UPF3AQ9H1J1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
UPF3AQ9H1J1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
UPF3AQ9H1J1 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
UPF3AQ9H1J1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.6■■□□□ 1.69
UPF3AQ9H1J1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
UPF3AQ9H1J1 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.6■■□□□ 1.69
UPF3AQ9H1J1 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
UPF3AQ9H1J1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
UPF3AQ9H1J1 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
UPF3AQ9H1J1 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
UPF3AQ9H1J1 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.59■■□□□ 1.69
UPF3AQ9H1J1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.59■■□□□ 1.69
UPF3AQ9H1J1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.59■■□□□ 1.69
UPF3AQ9H1J1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC25.59■■□□□ 1.69
UPF3AQ9H1J1 AC233992.3-201ENST00000607491 485 ntBASIC25.59■■□□□ 1.69
UPF3AQ9H1J1 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
UPF3AQ9H1J1 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
UPF3AQ9H1J1 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
UPF3AQ9H1J1 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.58■■□□□ 1.69
UPF3AQ9H1J1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
UPF3AQ9H1J1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
UPF3AQ9H1J1 BX842568.3-201ENST00000418104 571 ntBASIC25.58■■□□□ 1.69
UPF3AQ9H1J1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.58■■□□□ 1.69
UPF3AQ9H1J1 MIR3181-201ENST00000578512 73 ntBASIC25.58■■□□□ 1.69
UPF3AQ9H1J1 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
UPF3AQ9H1J1 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
UPF3AQ9H1J1 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.57■■□□□ 1.68
UPF3AQ9H1J1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.57■■□□□ 1.68
UPF3AQ9H1J1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
UPF3AQ9H1J1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.57■■□□□ 1.68
UPF3AQ9H1J1 AC009086.3-201ENST00000623486 1008 ntBASIC25.57■■□□□ 1.68
UPF3AQ9H1J1 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
UPF3AQ9H1J1 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
UPF3AQ9H1J1 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
UPF3AQ9H1J1 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms