Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
HMGB4Q8WW32 AC009102.2-201ENST00000606772 1639 ntBASIC23.08■■□□□ 1.28
HMGB4Q8WW32 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.08■■□□□ 1.28
HMGB4Q8WW32 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB4Q8WW32 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB4Q8WW32 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HMGB4Q8WW32 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.07■■□□□ 1.28
HMGB4Q8WW32 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGB4Q8WW32 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB4Q8WW32 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.06■■□□□ 1.28
HMGB4Q8WW32 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
HMGB4Q8WW32 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB4Q8WW32 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGB4Q8WW32 CA15P2-201ENST00000611168 834 ntBASIC23.06■■□□□ 1.28
HMGB4Q8WW32 MIR6089-201ENST00000616698 64 ntBASIC23.06■■□□□ 1.28
HMGB4Q8WW32 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.05■■□□□ 1.28
HMGB4Q8WW32 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
HMGB4Q8WW32 AC104564.3-201ENST00000582367 638 ntBASIC23.05■■□□□ 1.28
HMGB4Q8WW32 AC008764.7-201ENST00000593779 1081 ntBASIC23.05■■□□□ 1.28
HMGB4Q8WW32 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB4Q8WW32 RASA4CP-201ENST00000424092 1398 ntBASIC23.04■■□□□ 1.28
HMGB4Q8WW32 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB4Q8WW32 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB4Q8WW32 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.04■■□□□ 1.28
HMGB4Q8WW32 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGB4Q8WW32 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB4Q8WW32 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB4Q8WW32 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC23.03■■□□□ 1.28
HMGB4Q8WW32 AC027682.1-201ENST00000562846 899 ntBASIC23.03■■□□□ 1.28
HMGB4Q8WW32 AC011298.3-201ENST00000615796 283 ntBASIC23.03■■□□□ 1.28
HMGB4Q8WW32 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.03■■□□□ 1.28
HMGB4Q8WW32 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.03■■□□□ 1.28
HMGB4Q8WW32 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
HMGB4Q8WW32 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HMGB4Q8WW32 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.02■■□□□ 1.28
HMGB4Q8WW32 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB4Q8WW32 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB4Q8WW32 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
HMGB4Q8WW32 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HMGB4Q8WW32 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 AL138724.1-201ENST00000606771 1088 ntBASIC23.01■■□□□ 1.27
HMGB4Q8WW32 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
HMGB4Q8WW32 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23■■□□□ 1.27
HMGB4Q8WW32 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
HMGB4Q8WW32 ANKRD20A6P-201ENST00000618763 204 ntBASIC23■■□□□ 1.27
HMGB4Q8WW32 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
HMGB4Q8WW32 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23■■□□□ 1.27
HMGB4Q8WW32 DUSP8P4-201ENST00000399538 1761 ntBASIC22.99■■□□□ 1.27
HMGB4Q8WW32 C17orf82-201ENST00000623772 1530 ntBASIC22.99■■□□□ 1.27
HMGB4Q8WW32 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB4Q8WW32 AC099791.1-201ENST00000416440 715 ntBASIC22.99■■□□□ 1.27
HMGB4Q8WW32 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB4Q8WW32 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB4Q8WW32 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB4Q8WW32 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB4Q8WW32 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB4Q8WW32 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HMGB4Q8WW32 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGB4Q8WW32 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC22.98■■□□□ 1.27
HMGB4Q8WW32 MIR6821-201ENST00000617625 74 ntBASIC22.98■■□□□ 1.27
HMGB4Q8WW32 AC241377.3-202ENST00000626088 1088 ntBASIC22.98■■□□□ 1.27
HMGB4Q8WW32 AC241585.3-202ENST00000628937 1088 ntBASIC22.98■■□□□ 1.27
HMGB4Q8WW32 AC245100.8-202ENST00000629247 1058 ntBASIC22.98■■□□□ 1.27
HMGB4Q8WW32 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGB4Q8WW32 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
HMGB4Q8WW32 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
HMGB4Q8WW32 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
HMGB4Q8WW32 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGB4Q8WW32 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 AC006455.2-201ENST00000429931 906 ntBASIC22.97■■□□□ 1.27
HMGB4Q8WW32 PARL-206ENST00000435888 1098 ntTSL 5 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.97■■□□□ 1.27
HMGB4Q8WW32 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
HMGB4Q8WW32 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGB4Q8WW32 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGB4Q8WW32 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGB4Q8WW32 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
HMGB4Q8WW32 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
HMGB4Q8WW32 AC097381.1-201ENST00000429019 1296 ntBASIC22.96■■□□□ 1.27
HMGB4Q8WW32 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
HMGB4Q8WW32 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms