Protein–RNA interactions for Protein: Q8TEJ3

SH3RF3, SH3 domain-containing RING finger protein 3, humanhuman

Predicted RBP Predictions only

Length 882 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF3Q8TEJ3 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SH3RF3Q8TEJ3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SH3RF3Q8TEJ3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SH3RF3Q8TEJ3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
SH3RF3Q8TEJ3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.39■■□□□ 1.98
SH3RF3Q8TEJ3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.98
SH3RF3Q8TEJ3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SH3RF3Q8TEJ3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC27.39■■□□□ 1.98
SH3RF3Q8TEJ3 PBX2P1-201ENST00000493219 1291 ntBASIC27.39■■□□□ 1.98
SH3RF3Q8TEJ3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SH3RF3Q8TEJ3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC27.39■■□□□ 1.98
SH3RF3Q8TEJ3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
SH3RF3Q8TEJ3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.97
SH3RF3Q8TEJ3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 AC135731.1-201ENST00000569415 2548 ntBASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SH3RF3Q8TEJ3 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
SH3RF3Q8TEJ3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC27.37■■□□□ 1.97
SH3RF3Q8TEJ3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC27.37■■□□□ 1.97
SH3RF3Q8TEJ3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SH3RF3Q8TEJ3 AC106739.1-201ENST00000617035 715 ntBASIC27.37■■□□□ 1.97
SH3RF3Q8TEJ3 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SH3RF3Q8TEJ3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
SH3RF3Q8TEJ3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SH3RF3Q8TEJ3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SH3RF3Q8TEJ3 AC133561.4-201ENST00000566112 224 ntBASIC27.36■■□□□ 1.97
SH3RF3Q8TEJ3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SH3RF3Q8TEJ3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SH3RF3Q8TEJ3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SH3RF3Q8TEJ3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC27.35■■□□□ 1.97
SH3RF3Q8TEJ3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF3Q8TEJ3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF3Q8TEJ3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
SH3RF3Q8TEJ3 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF3Q8TEJ3 AL136162.1-201ENST00000607711 1078 ntBASIC27.35■■□□□ 1.97
SH3RF3Q8TEJ3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF3Q8TEJ3 AC138932.3-201ENST00000567634 1902 ntBASIC27.35■■□□□ 1.97
SH3RF3Q8TEJ3 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC27.34■■□□□ 1.97
SH3RF3Q8TEJ3 AC009102.2-201ENST00000606772 1639 ntBASIC27.34■■□□□ 1.97
SH3RF3Q8TEJ3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF3Q8TEJ3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF3Q8TEJ3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF3Q8TEJ3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF3Q8TEJ3 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC27.34■■□□□ 1.97
SH3RF3Q8TEJ3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 AP003733.4-201ENST00000623785 1697 ntBASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.33■■□□□ 1.97
SH3RF3Q8TEJ3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SH3RF3Q8TEJ3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SH3RF3Q8TEJ3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
SH3RF3Q8TEJ3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC27.32■■□□□ 1.96
SH3RF3Q8TEJ3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC27.32■■□□□ 1.96
SH3RF3Q8TEJ3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 MIR935-201ENST00000401179 91 ntBASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 AC024257.2-201ENST00000549699 147 ntBASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF3Q8TEJ3 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 AL161729.1-201ENST00000604104 1402 ntBASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SH3RF3Q8TEJ3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SH3RF3Q8TEJ3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SH3RF3Q8TEJ3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC27.29■■□□□ 1.96
SH3RF3Q8TEJ3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC27.29■■□□□ 1.96
SH3RF3Q8TEJ3 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC27.29■■□□□ 1.96
SH3RF3Q8TEJ3 AL031432.3-201ENST00000607698 485 ntBASIC27.29■■□□□ 1.96
SH3RF3Q8TEJ3 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SH3RF3Q8TEJ3 AC135279.3-201ENST00000610945 1311 ntBASIC27.29■■□□□ 1.96
SH3RF3Q8TEJ3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms